| MirGeneDB ID | Spt-Mir-192-P2 |
|---|---|
| Family name | MIR-192 (all species) |
| Species | Tuatara (Sphenodon punctatus) |
| MiRBase ID | |
| Paralogues | Spt-Mir-192-P4 |
| Orthologues | Aca-Mir-192-P2 Ami-Mir-192-P2 Bta-Mir-192-P2 Cfa-Mir-192-P2 Cja-Mir-192-P2 Cli-Mir-192-P2 Cmi-Mir-192-P2 Cpi-Mir-192-P2 Cpo-Mir-192-P2 Dno-Mir-192-P2 Eca-Mir-192-P2 Ete-Mir-192-P2 Gga-Mir-192-P2 Gja-Mir-192-P2 Hsa-Mir-192-P2 Laf-Mir-192-P2 Lch-Mir-192-P2 Mdo-Mir-192-P2 Mml-Mir-192-P2 Mmr-Mir-192-P2 Mmu-Mir-192-P2 Mun-Mir-192-P2 Oan-Mir-192-P2 Oan-Mir-192-P2-as Ocu-Mir-192-P2 Pab-Mir-192-P2 Pbv-Mir-192-P2 Rno-Mir-192-P2 Sto-Mir-192-P2 Tgu-Mir-192-P2 Xla-Mir-192-P2a Xla-Mir-192-P2b Xtr-Mir-192-P2 |
| Node of Origin (locus) | Vertebrata |
| Node of Origin (family) | Vertebrata |
| Genome context (GCA_003113815.1_ASM311381v1_TUATARA) |
QEPC01005170.1: 339744-339804 [-] UCSC Ensembl |
| Clustered miRNAs (< 50kb from Mir-192-P2) |
Mir-192-P2
QEPC01005170.1: 339744-339804 [-]
UCSC
Ensembl
Mir-194-P2 QEPC01005170.1: 340064-340119 [-] UCSC Ensembl |
| Seed | UGACCUA |
| Precursor (pre-Mir +30nt flank) |
UCGCUUUAAUCAGAACUGGUGUACAGGAUAAUGACCUAUGAAUUGACAGACUGUGUAUCCUAAUUGUGUCUGUCAUUUCUGUAGGCCAACAUUCUGCAUGCCUUCACUUCUCAAGAAUCGGGet precursor sequence |
| Structure | 10 20 30 40 50 UCGCUUUAAUCAGAACU-- A AA A -| U UGUGUAU GGUGU CAGGAU UG CCUAU GAA UGACAGAC C CCGUA GUCUUA AC GGAUG CUU ACUGUCUG C GGCUAAGAACUCUUCACUU C CA C U^ U UGUUAAU . 110 100 90 80 70 60 |
| Deep sequencing | |
| 3' NTU | Unknown |
| Motifs | UG at 5p(-14), CNNC at 3p(+17), UGUG in loop |
| Mature sequence | Spt-Mir-192-P2_5p (predicted) |
| mirBase accession | None |
| Sequence |
0- AUGACCUAUGAAUUGACAGACU -22
Get sequence
|
| Star sequence | Spt-Mir-192-P2_3p* (predicted) |
| mirBase accession | None |
| Sequence |
38- UCUGUCAUUUCUGUAGGCCAACA -61
Get sequence
|
