MirGeneDB

MirGeneDB ID

Rno-Mir-459

Family name MIR-459 (all species)
Seed CAGUAAC
Species Norway rat (Rattus norvegicus)
MiRBase ID rno-mir-802
Paralogues
Orthologues Ami-Mir-459  Bta-Mir-459  Cfa-Mir-459  Cli-Mir-459  Cpi-Mir-459  Cpo-Mir-459  Dno-Mir-459  Dre-Mir-459  Ete-Mir-459  Hsa-Mir-459  Mml-Mir-459  Mmu-Mir-459  Oan-Mir-459  Ocu-Mir-459  Sto-Mir-459  Xtr-Mir-459 
Node of Origin (locus) Vertebrata
Node of Origin (family) Vertebrata
Genome context
(rn6)
chr11: 33570272-33570332 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
GUUACGUGGCCACAGUCCUAUUAUUUGCAGUCAGUAACAAAGAUUCAUCCUUGUGUCGAUCAUACAGCACGGAGAGUCUUUGUCACUCAGUGUAAUUAAUAGCCUUCACCUCGCAAGGGAC
Get precursor sequence
Structure
        10          20        30        40        50        60
GUUACGUGGCCACAGUC--|     U     GUC   A          A   U   GUCGA 
                   CUAUUA UUGCA   AGU ACAAAGAUUC UCC UGU     U
                   GAUAAU AAUGU   UCA UGUUUCUGAG AGG ACG     C
CAGGGAACGCUCCACUUCC^     U     GAC   C          -   C   ACAUA 
 .       110       100        90        80         70
Deep sequencing
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3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
 +
Br Fa He Ki La Li Li Lu Mu Pa Sk Sm Sp St Te Th
Mature sequence

Rno-Mir-459_5p

MirBase accessionMIMAT0012840
Sequence
0- UCAGUAACAAAGAUUCAUCCUUGU -24
Get sequence
Validated targets microrna.org: MIMAT0012840
TargetScanVert: rno-miR-802-5p
miRDB: MIMAT0012840
Star sequence

Rno-Mir-459_3p*

MirBase accessionMIMAT0017362
Sequence
38- ACGGAGAGUCUUUGUCACUCAGU -61
Get sequence
Validated targets TargetScanVert: rno-miR-802-3p
miRDB: MIMAT0017362