MirGeneDB 2.1

MirGeneDB ID

Xtr-Mir-132-P2

Family name MIR-132 (all species)
Seed CCUUGGC
Species Tropical clawed frog (Xenopus tropicalis)
MiRBase ID xtr-mir-212
Paralogues Xtr-Mir-132-P1 
Orthologues Aca-Mir-132-P2  Ami-Mir-132-P2  Bta-Mir-132-P2  Cfa-Mir-132-P2  Cmi-Mir-132-P2  Cpi-Mir-132-P2  Cpo-Mir-132-P2  Dno-Mir-132-P2  Dre-Mir-132-P2a  Dre-Mir-132-P2b  Gga-Mir-132-P2  Gja-Mir-132-P2  Gmo-Mir-132-P2a  Gmo-Mir-132-P2b  Hsa-Mir-132-P2  Lch-Mir-132-P2  Loc-Mir-132-P2  Mal-Mir-132-P2a  Mal-Mir-132-P2b  Mdo-Mir-132-P2  Mml-Mir-132-P2  Mmu-Mir-132-P2  Mun-Mir-132-P2  Oan-Mir-132-P2  Ocu-Mir-132-P2  Pbv-Mir-132-P2  Pma-Mir-132-o2  Rno-Mir-132-P2  Sha-Mir-132-P2  Spt-Mir-132-P2  Tgu-Mir-132-P2  Tni-Mir-132-P2a  Tni-Mir-132-P2b  Xla-Mir-132-P2c  Xla-Mir-132-P2d 
Node of Origin (locus) Vertebrata
Node of Origin (family) Vertebrata
Genome context
(xenTro9_add)
chr2: 27657646-27657714 [+] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-132-P2)
Mir-132-P2 chr2: 27657646-27657714 [+] UCSC Ensembl
Mir-132-P1 chr2: 27663375-27663433 [+] UCSC Ensembl
Mir-2184 chr2: 27689436-27689495 [-] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
UGAUGCUCACCUAAUGGUCAUUGCAUCGGCACCUUGGCUCUAGACUGCUUACUGUGAAACUGUGCUAUAGGAACAGUAACAGUCUACAGUCAUGGCUACUGACGUAUGACUGCUACUUCUGUACAGCCA
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Structure
        10           20        30         40        50        60    
UGAUGCUCACCUAAUGG---|   U  A    CA-  U     C       C     GUGAAACUGU 
                    UCAU GC UCGG   CC UGGCU UAGACUG UUACU          \
                    AGUA UG AGUC   GG ACUGA AUCUGAC AAUGA          G
ACCGACAUGUCUUCAUCGUC^   -  C    AUC  U     C       -     CAAGGAUAUC 
       120       110        100        90        80         70
Deep sequencing
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3' NTU No
MotifsCNNC at 3p(+17), UGUG in loop
Tissue expression
 +
Br Em Em Em Em He
Mature sequence

Xtr-Mir-132-P2_5p

mirBase accessionNone
Sequence
0- ACCUUGGCUCUAGACUGCUUACU -23
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Co-mature sequence

Xtr-Mir-132-P2_3p

mirBase accessionMIMAT0003699
Sequence
46- UAACAGUCUACAGUCAUGGCUAC -69
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Proposed targets TargetScanVert: xtr-miR-212