MirGeneDB 3.0

MirGeneDB ID

Lch-Mir-132-P2

Family name MIR-132 (all species)
Species Coelacanth (Latimeria chalumnae)
MiRBase ID
Paralogues Lch-Mir-132-P1 
Orthologues Aca-Mir-132-P2  Ami-Mir-132-P2  Bta-Mir-132-P2  Cfa-Mir-132-P2  Cja-Mir-132-P2  Cmi-Mir-132-P2  Cpi-Mir-132-P2  Cpo-Mir-132-P2  Dno-Mir-132-P2  Dre-Mir-132-P2a  Dre-Mir-132-P2b  Eca-Mir-132-P2  Gga-Mir-132-P2  Gja-Mir-132-P2  Gmo-Mir-132-P2a  Gmo-Mir-132-P2b  Hsa-Mir-132-P2  Laf-Mir-132-P2  Loc-Mir-132-P2  Mal-Mir-132-P2a  Mal-Mir-132-P2b  Mdo-Mir-132-P2  Mml-Mir-132-P2  Mmr-Mir-132-P2  Mmu-Mir-132-P2  Mun-Mir-132-P2  Neu-Mir-132-P2  Oan-Mir-132-P2  Ocu-Mir-132-P2  Pab-Mir-132-P2  Pbv-Mir-132-P2  Pma-Mir-132-o2  Rno-Mir-132-P2  Sha-Mir-132-P2  Spt-Mir-132-P2  Tgu-Mir-132-P2  Tni-Mir-132-P2a  Tni-Mir-132-P2b  Xla-Mir-132-P2c  Xla-Mir-132-P2d  Xtr-Mir-132-P2 
Node of Origin (locus) Vertebrata
Node of Origin (family) Vertebrata
Genome context
(LatCha1_add)
JH128089.1: 379330-379397 [+] Ensembl
Clustered miRNAs
(< 50kb from Mir-132-P2)
Mir-132-P2 JH128089.1: 379330-379397 [+] Ensembl
Mir-132-P1 JH128089.1: 385834-385892 [+] Ensembl
Mir-2184 JH128089.1: 395160-395219 [-] Ensembl
Seed CCUUGGC
Precursor
(pre-Mir +30nt flank)
CCGCCAUCGAAUAUCAGUCAGAGCGUCAACACCUUGGCUCUAGACUGCUUACUGCUAAAUGUUGUGAAAGAUACAGUAACAGUCUACAGUCAUGGCUACUGAAGCAUGACAACUUCUUCAGCUGGAAG
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Structure
        10          20        30         40        50        60    
CCGCCAUCGAAUAUCAG--|  GA  G   ACA-  U     C       C     GCUAAAUGUU 
                   UCA  GC UCA    CC UGGCU UAGACUG UUACU          \
                   AGU  CG AGU    GG ACUGA AUCUGAC AAUGA          G
GAAGGUCGACUUCUUCAAC^  A-  A   CAUC  U     C       -     CAUAGAAAGU 
      120       110        100        90        80         70
Deep sequencing
3' NTU Unknown
MotifsCNNC at 3p(+17)
Mature sequence

Lch-Mir-132-P2_5p (predicted)

mirBase accessionNone
Sequence
0- ACCUUGGCUCUAGACUGCUUACU -23
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Co-mature sequence

Lch-Mir-132-P2_3p (predicted)

mirBase accessionNone
Sequence
46- UAACAGUCUACAGUCAUGGCUA -68
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