| MirGeneDB ID | Lch-Mir-132-P1 |
|---|---|
| Family name | MIR-132 (all species) |
| Species | Coelacanth (Latimeria chalumnae) |
| MiRBase ID | |
| Paralogues | Lch-Mir-132-P2 |
| Orthologues | Aca-Mir-132-P1 Ami-Mir-132-P1 Bta-Mir-132-P1 Cfa-Mir-132-P1 Cja-Mir-132-P1 Cmi-Mir-132-P1 Cpi-Mir-132-P1 Cpo-Mir-132-P1 Dno-Mir-132-P1 Dre-Mir-132-P1a Dre-Mir-132-P1b Ebu-Mir-132-P1e Ebu-Mir-132-P1f Eca-Mir-132-P1 Ete-Mir-132-P1 Gga-Mir-132-P1 Gja-Mir-132-P1 Gmo-Mir-132-P1a Gmo-Mir-132-P1b Hsa-Mir-132-P1 Laf-Mir-132-P1 Loc-Mir-132-P1 Mal-Mir-132-P1a Mal-Mir-132-P1b Mdo-Mir-132-P1 Mml-Mir-132-P1 Mmr-Mir-132-P1 Mmu-Mir-132-P1 Mun-Mir-132-P1 Neu-Mir-132-P1 Oan-Mir-132-P1 Ocu-Mir-132-P1 Pab-Mir-132-P1 Pbv-Mir-132-P1 Pma-Mir-132-o1 Rno-Mir-132-P1 Sha-Mir-132-P1 Spt-Mir-132-P1 Sto-Mir-132-P1 Tgu-Mir-132-P1 Tni-Mir-132-P1a Tni-Mir-132-P1b Xla-Mir-132-P1c Xla-Mir-132-P1d Xtr-Mir-132-P1 |
| Node of Origin (locus) | Vertebrata |
| Node of Origin (family) | Vertebrata |
| Genome context (LatCha1_add) |
JH128089.1: 385834-385892 [+] Ensembl |
| Clustered miRNAs (< 50kb from Mir-132-P1) |
Mir-132-P2
JH128089.1: 379330-379397 [+]
Ensembl
Mir-132-P1 JH128089.1: 385834-385892 [+] Ensembl Mir-2184 JH128089.1: 395160-395219 [-] Ensembl |
| Seed | AACAGUC |
| Precursor (pre-Mir +30nt flank) |
GCAACCAGAGCUACCCUGGUCUCCGAGGCAACCGUGGCUUUAGAUUGUUACUGUAUGUAUGCAGUGGUAACAGUCUACAGCCAUGGUCGUUCGGGUAAGACGCACUCUGCAAACUCCACGet precursor sequence |
| Structure | 10 20 30 40 50 GCAACCAGAGCUACCCUG ---| G A U GUAUGU GUCU CCGAG C ACCGUGGCU UAGAUUGUUACU \ CAGA GGCUU G UGGUACCGA AUCUGACAAUGG A CACCUCAAACGUCUCACG AUG^ - C C UGACGU 110 100 90 80 70 60 |
| Deep sequencing | |
| 3' NTU | Unknown |
| Motifs | UG at 5p(-14), CNNC at 3p(+17) |
| Star sequence | Lch-Mir-132-P1_5p* (predicted) |
| mirBase accession | None |
| Sequence |
0- ACCGUGGCUUUAGAUUGUUACU -22
Get sequence
|
| Mature sequence | Lch-Mir-132-P1_3p (predicted) |
| mirBase accession | None |
| Sequence |
37- UAACAGUCUACAGCCAUGGUCG -59
Get sequence
|
