Mir-132-P1b

MirGeneDB ID

Dre-Mir-132-P1b

Family name

MIR-132 (all species)

Species

Zebrafish (Danio rerio)

MiRBase ID

dre-mir-132-2

Paralogues

Dre-Mir-132-P1a Dre-Mir-132-P2a Dre-Mir-132-P2b

Orthologues

Aca-Mir-132-P1 Ami-Mir-132-P1 Bta-Mir-132-P1 Cfa-Mir-132-P1 Cja-Mir-132-P1 Cmi-Mir-132-P1 Cpi-Mir-132-P1 Cpo-Mir-132-P1 Dno-Mir-132-P1 Eca-Mir-132-P1 Ete-Mir-132-P1 Gga-Mir-132-P1 Gja-Mir-132-P1 Gmo-Mir-132-P1b Hsa-Mir-132-P1 Laf-Mir-132-P1 Lch-Mir-132-P1 Loc-Mir-132-P1 Mal-Mir-132-P1b Mdo-Mir-132-P1 Mml-Mir-132-P1 Mmr-Mir-132-P1 Mmu-Mir-132-P1 Mun-Mir-132-P1 Neu-Mir-132-P1 Oan-Mir-132-P1 Ocu-Mir-132-P1 Pab-Mir-132-P1 Pbv-Mir-132-P1 Pma-Mir-132-o1 Rno-Mir-132-P1 Sha-Mir-132-P1 Spt-Mir-132-P1 Sto-Mir-132-P1 Tgu-Mir-132-P1 Tni-Mir-132-P1b Xtr-Mir-132-P1

Node of Origin (locus)

Clupeocephala

Node of Origin (family)

Vertebrata

Genome context
(danRer11)

chr10: 35645043-35645103 [+] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-132-P1b)

Mir-132-P2b chr10: 35644719-35644787 [+] UCSC Ensembl
Mir-132-P1b chr10: 35645043-35645103 [+] UCSC Ensembl
Mir-2184-P1a chr10: 35654276-35654332 [-] UCSC Ensembl

Seed

AACAGUC

Precursor
(pre-Mir +30nt flank)

CUCAUCCCUUCCUCUGCUGUCUCCAUGCUGACCGUGGCUUUAGAUUGUUACUGUAGCGUUGGCACGUGGUAACAGUCUACAGCCAUGGUCGCCAAGGGGCAGGUGUUACAGCGACUACUGG

Get precursor sequence

Structure

        10           20        30        40        50          
CUCAUCCCUUCCUCUGC---|   U  A  C           U            GUAGCGU 
                    UGUC CC UG UGACCGUGGCU UAGAUUGUUACU       \
                    ACGG GG AC GCUGGUACCGA AUCUGACAAUGG       U
GGUCAUCAGCGACAUUGUGG^   -  A  C           C            UGCACGG 
 .       110       100         90        80        70

Deep sequencing

Go to detailed chart

3' NTU

Motifs

CNNC at 3p(+17)

Tissue expression

Br	Br	Em	Ey	Gu	Gu	He	Li	Li	Ov	Te

Star sequence

Dre-Mir-132-P1b_5p*

mirBase accession

None

Sequence

0- ACCGUGGCUUUAGAUUGUUACU -22

Get sequence

Mature sequence

Dre-Mir-132-P1b_3p

mirBase accession

MIMAT0001829

Sequence

39- UAACAGUCUACAGCCAUGGUCG -61

Get sequence

Proposed targets

TargetScanFish: dre-miR-132