MirGeneDB 2.1
MirGeneDB ID

Ami-Mir-132-P1

Family name MIR-132 (all species)
Seed CCGUGGC
Species American alligator (Alligator mississippiensis)
MiRBase ID ami-mir-132
Paralogues Ami-Mir-132-P2 
Orthologues Aca-Mir-132-P1  Bta-Mir-132-P1  Cfa-Mir-132-P1  Cmi-Mir-132-P1  Cpi-Mir-132-P1  Cpo-Mir-132-P1  Dno-Mir-132-P1  Dre-Mir-132-P1a  Dre-Mir-132-P1b  Ebu-Mir-132-P1e  Ebu-Mir-132-P1f  Ete-Mir-132-P1  Gga-Mir-132-P1  Gja-Mir-132-P1  Gmo-Mir-132-P1a  Gmo-Mir-132-P1b  Hsa-Mir-132-P1  Lch-Mir-132-P1  Loc-Mir-132-P1  Mal-Mir-132-P1a  Mal-Mir-132-P1b  Mdo-Mir-132-P1  Mml-Mir-132-P1  Mmu-Mir-132-P1  Mun-Mir-132-P1  Oan-Mir-132-P1  Ocu-Mir-132-P1  Pbv-Mir-132-P1  Pma-Mir-132-o1  Rno-Mir-132-P1  Sha-Mir-132-P1  Spt-Mir-132-P1  Sto-Mir-132-P1  Tgu-Mir-132-P1  Tni-Mir-132-P1a  Tni-Mir-132-P1b  Xla-Mir-132-P1c  Xla-Mir-132-P1d  Xtr-Mir-132-P1 
Node of Origin (locus) Vertebrata
Node of Origin (family) Vertebrata
Genome context
(GCF_000281125.3_ASM28112v4_AMI_add)		 NW_017709726.1: 290-347 [+] UCSC
Clustered miRNAs
(< 50kb from Mir-132-P1)		 Mir-132-P1 NW_017709726.1: 290-347 [+] UCSC
Mir-2184 NW_017709726.1: 567-625 [-] UCSC
Precursor
(pre-Mir +30nt flank)
ACGUCAACCUCCCCGCACGUCGCCAGGGCAACCGUGGCUUUAGAUUGUUACUGUGUGGUGCGUGGGUAACAGUCUACAGCCAUGGUCGCUGGGCCGGACGCAUCUCGUCGCCGGGCUG
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Structure
        10         20          30        40        50        
ACGUCAACCUCCCCGCA-    --|  AG   A         U            GUGUG 
                  CGUC  GCC  GGC ACCGUGGCU UAGAUUGUUACU     G
                  GCAG  CGG  UCG UGGUACCGA AUCUGACAAUGG     U
GUCGGGCCGCUGCUCUAC    GC^  G-   C         C            GUGCG 
      110       100         90        80        70        60
Deep sequencing
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3' NTU No
MotifsCNNC at 3p(+17), UGUG in loop
Tissue expression
-   +
To
Mature sequence

Ami-Mir-132-P1_5p
mirBase accessionMIMAT0038144
Sequence 
0- ACCGUGGCUUUAGAUUGUUACU -22
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Star sequence

Ami-Mir-132-P1_3p*
mirBase accessionMIMAT0038145
Sequence 
36- UAACAGUCUACAGCCAUGGUCG -58
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