Mir-132-P1f

MirGeneDB ID

Ebu-Mir-132-P1f

Family name

MIR-132 (all species)

Species

Inshore hagfish (Eptatretus burgeri)

MiRBase ID

Paralogues

Ebu-Mir-132-P1e

Orthologues

Aca-Mir-132-P1 Ami-Mir-132-P1 Bta-Mir-132-P1 Cfa-Mir-132-P1 Cja-Mir-132-P1 Cmi-Mir-132-P1 Cpi-Mir-132-P1 Cpo-Mir-132-P1 Dno-Mir-132-P1 Eca-Mir-132-P1 Ete-Mir-132-P1 Gga-Mir-132-P1 Gja-Mir-132-P1 Hsa-Mir-132-P1 Laf-Mir-132-P1 Lch-Mir-132-P1 Loc-Mir-132-P1 Mdo-Mir-132-P1 Mml-Mir-132-P1 Mmr-Mir-132-P1 Mmu-Mir-132-P1 Mun-Mir-132-P1 Neu-Mir-132-P1 Oan-Mir-132-P1 Ocu-Mir-132-P1 Pab-Mir-132-P1 Pbv-Mir-132-P1 Pma-Mir-132-o1 Rno-Mir-132-P1 Sha-Mir-132-P1 Spt-Mir-132-P1 Sto-Mir-132-P1 Tgu-Mir-132-P1 Xtr-Mir-132-P1

Node of Origin (locus)

E. burgeri

Node of Origin (family)

Vertebrata

Genome context
(Eburgeri_3)

FYBX02009908.1: 8061148-8061213 [+] UCSC Ensembl

Seed

AACAGUC

Precursor
(pre-Mir +30nt flank)

CUCUCGCGCCCCCUGUGCCUGUCUCGGACCCCCGUGGCGUUAGACUGUUACUCUGGCCUAUUUGUCCCCGUUGGUAACAGUCUAUAGCCAUGGUUGUCCGGACGGGUCUUGCACACCUGUGGCUCC

Get precursor sequence

Structure

        10           20        30        40        50        60  
CUCUCGCGCCCCCUGUG---|     U     CC       GU            CUGGCCUAU 
                    CCUGUC CGGAC  CCGUGGC  UAGACUGUUACU         U
                    GGGCAG GCCUG  GGUACCG  AUCUGACAAUGG         U
CCUCGGUGUCCACACGUUCU^     -     UU       AU            UUGCCCCUG 
    120       110        100        90        80        70

Deep sequencing

Go to detailed chart

3' NTU

Motifs

CNNC at 3p(+17)

Tissue expression

To

Star sequence

Ebu-Mir-132-P1f_5p*

mirBase accession

None

Sequence

0- CCCGUGGCGUUAGACUGUUACU -22

Get sequence

Mature sequence

Ebu-Mir-132-P1f_3p

mirBase accession

None

Sequence

44- UAACAGUCUAUAGCCAUGGUUG -66

Get sequence