Mir-132-o1

MirGeneDB ID

Pma-Mir-132-o1

Family name

MIR-132 (all species)

Species

Sea Lamprey (Petromyzon marinus)

MiRBase ID

Paralogues

Pma-Mir-132-o2 Pma-Mir-132-o3

Orthologues

Aca-Mir-132-P1 Ami-Mir-132-P1 Bta-Mir-132-P1 Cfa-Mir-132-P1 Cja-Mir-132-P1 Cmi-Mir-132-P1 Cpi-Mir-132-P1 Cpo-Mir-132-P1 Dno-Mir-132-P1 Dre-Mir-132-P1a Dre-Mir-132-P1b Ebu-Mir-132-P1e Ebu-Mir-132-P1f Eca-Mir-132-P1 Ete-Mir-132-P1 Gga-Mir-132-P1 Gja-Mir-132-P1 Gmo-Mir-132-P1a Gmo-Mir-132-P1b Hsa-Mir-132-P1 Laf-Mir-132-P1 Lch-Mir-132-P1 Loc-Mir-132-P1 Mal-Mir-132-P1a Mal-Mir-132-P1b Mdo-Mir-132-P1 Mml-Mir-132-P1 Mmr-Mir-132-P1 Mmu-Mir-132-P1 Mun-Mir-132-P1 Neu-Mir-132-P1 Oan-Mir-132-P1 Ocu-Mir-132-P1 Pab-Mir-132-P1 Pbv-Mir-132-P1 Rno-Mir-132-P1 Sha-Mir-132-P1 Spt-Mir-132-P1 Sto-Mir-132-P1 Tgu-Mir-132-P1 Tni-Mir-132-P1a Tni-Mir-132-P1b Xla-Mir-132-P1c Xla-Mir-132-P1d Xtr-Mir-132-P1

Node of Origin (locus)

P. marinus

Node of Origin (family)

Vertebrata

Genome context
(GCF_010993605.1_kPetMar1.pri_genomic)

NW_022638381.1: 3829-3892 [+] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-132-o1)

Mir-132-o2 NW_022638381.1: 2463-2521 [+] UCSC Ensembl
Mir-132-o1 NW_022638381.1: 3829-3892 [+] UCSC Ensembl

Seed

AACAGUC

Precursor
(pre-Mir +30nt flank)

CACACCCACAGCCUCGCCGUUGCCAUGGUAACCGUGGCUUUAGAUUGUUACUGUUGCCAUGGCGAUCUCCAGUAACAGUCUACAGCCAUGGUUGCCAAGGGCGGCCCUAGCAACGCGAAGAAAU

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Structure

        10         20         30        40        50        60 
CACACCCACAGCCUCGCC-      A-|             U            GUUGCCAU 
                   GUUGCC  UGGUAACCGUGGCU UAGAUUGUUACU        G
                   CGGCGG  ACCGUUGGUACCGA AUCUGACAAUGA        G
UAAAGAAGCGCAACGAUCC      GA^             C            CCUCUAGC 
  120       110       100        90        80        70

Deep sequencing

Go to detailed chart

3' NTU

Motifs

CNNC at 3p(+17)

Tissue expression

Br	Gi	Gu	He	Ki	La	Li	Mo	Mu	Sk

Star sequence

Pma-Mir-132-o1_5p*

mirBase accession

None

Sequence

0- ACCGUGGCUUUAGAUUGUUACU -22

Get sequence

Mature sequence

Pma-Mir-132-o1_3p

mirBase accession

None

Sequence

42- UAACAGUCUACAGCCAUGGUUG -64

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