MirGeneDB 2.1
MirGeneDB ID

Tni-Mir-187

Family name MIR-187 (all species)
Seed CGUGUCU
Species Pufferfish (Tetraodon nigroviridis)
MiRBase ID tni-mir-187
Paralogues
Orthologues Aca-Mir-187  Ami-Mir-187  Bta-Mir-187  Cfa-Mir-187  Cli-Mir-187  Cpi-Mir-187  Cpo-Mir-187  Dno-Mir-187  Dre-Mir-187  Ete-Mir-187  Gga-Mir-187  Gja-Mir-187  Gmo-Mir-187  Hsa-Mir-187  Lch-Mir-187  Loc-Mir-187  Mal-Mir-187  Mdo-Mir-187  Mml-Mir-187  Mmu-Mir-187  Mun-Mir-187  Oan-Mir-187  Ocu-Mir-187  Rno-Mir-187  Sha-Mir-187  Spt-Mir-187  Tgu-Mir-187  Xtr-Mir-187 
Node of Origin (locus) Osteichthyes
Node of Origin (family) Osteichthyes
Genome context
(Tetraodon_nigroviridis.TETRAODON8.dna.toplevel)		 21: 1019291-1019352 [-] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
AGCUGGAGGCGGCCGUCUGGCCGUGCCAGGGGCUGCAACACAGGACAUGGGUCUUGCCUCUGCCCGCCGCUCGUGUCUUGUGUUGCAGCCAGUGGAACUGCCUGUCUGCCUCGGGCCCGCUG
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Structure
        10          20        30        40        50        60
AGCUGGAGGCGGCCGUCU--|  C  G   GG                      CUUGCCU 
                    GGC GU CCA  GGCUGCAACACAGGACAUGGGU       C
                    CCG CA GGU  CCGACGUUGUGUUCUGUGCUCG       U
GUCGCCCGGGCUCCGUCUGU^  U  A   GA                      CCGCCCG 
120       110       100        90        80        70
Deep sequencing
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CommentThe 3' end of the 3p arm is also monouridylated when not monoadenylated despite the templated uridine.
3' NTU Yes
MotifsCNNC at 3p(+17)
Tissue expression
-   +
Sp Sp Sp To
Star sequence

Tni-Mir-187_5p*
mirBase accessionNone
Sequence 
0- GGCUGCAACACAGGACAUGGGU -22
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Mature sequence

Tni-Mir-187_3p
mirBase accessionMIMAT0002931
Sequence 
40- UCGUGUCUUGUGUUGCAGCCAG -62
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