| MirGeneDB ID | Mdo-Mir-187 |
|---|
| Family name |
MIR-187 (all species) |
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| Species |
Gray short-tailed opossum (Monodelphis domestica) |
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| MiRBase ID |
mdo-mir-187
|
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| Paralogues |
|
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| Orthologues |
Aca-Mir-187
Ami-Mir-187
Bta-Mir-187
Cfa-Mir-187
Cja-Mir-187
Cli-Mir-187
Cpi-Mir-187
Cpo-Mir-187
Dno-Mir-187
Dre-Mir-187
Eca-Mir-187
Ete-Mir-187
Gga-Mir-187
Gja-Mir-187
Gmo-Mir-187
Hsa-Mir-187
Laf-Mir-187
Lch-Mir-187
Loc-Mir-187
Mal-Mir-187
Mml-Mir-187
Mmr-Mir-187
Mmu-Mir-187
Mun-Mir-187
Neu-Mir-187
Oan-Mir-187
Ocu-Mir-187
Pab-Mir-187
Rno-Mir-187
Sha-Mir-187
Spt-Mir-187
Tgu-Mir-187
Tni-Mir-187
Xtr-Mir-187
|
|---|
| Node of Origin (locus) |
Osteichthyes
|
|---|
| Node of Origin (family) |
Osteichthyes
|
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Genome context
(monDom5_add) |
3: 87606214-87606271 [+]
UCSC
Ensembl
|
|---|
| Seed |
CGUGUCU |
|---|
Precursor
(pre-Mir +30nt flank) |
AGGUUUGUCAUCAUGUAUUGUGAGACCUCUGGCUACAACACAGGACACGGGAGCUUUUCUGAACCCUCGUGUCUUGUGUUGCAGCCAGAGGGGCACAUCUUUGCGGCAGAGCCCCACU
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50
AGGUUUGUCAUCAUGUAU---| AGA A AGCUUU
UGUG CCUCUGGCU CAACACAGGACACGGG U
ACAC GGAGACCGA GUUGUGUUCUGUGCUC C
UCACCCCGAGACGGCGUUUCU^ GG- C CCAAGU
110 100 90 80 70 60 |
|---|
| Deep sequencing |
Go to detailed chart
|
|---|
| Comment | There is a second Drosha cut +1 on the 5p arm. The 3' end of the 3p arm is also likely monoadenylated when not monouridylated despite the templated adenosine. |
|---|
| 3' NTU |
Yes
|
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| Motifs | CNNC at 3p(+17) |
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Tissue expression
|
|
|---|
| Star sequence |
Mdo-Mir-187_5p* |
| mirBase accession | MIMAT0026674 |
|---|
| Sequence |
0- GGCUACAACACAGGACACGGGA -22
Get sequence
|
|---|
| Proposed targets |
TargetScanVert: mdo-miR-187-5p
|
|---|
| Mature sequence |
Mdo-Mir-187_3p |
| mirBase accession | MIMAT0004120 |
|---|
| Sequence |
36- UCGUGUCUUGUGUUGCAGCCAG -58
Get sequence
|
|---|
| Proposed targets |
TargetScanVert: mdo-miR-187-3p
|
|---|
