MirGeneDB 3.0
MirGeneDB ID

Ami-Mir-187

Family name MIR-187 (all species)
Species American alligator (Alligator mississippiensis)
MiRBase ID ami-mir-187
Paralogues
Orthologues Aca-Mir-187  Bta-Mir-187  Cfa-Mir-187  Cja-Mir-187  Cli-Mir-187  Cpi-Mir-187  Cpo-Mir-187  Dno-Mir-187  Dre-Mir-187  Eca-Mir-187  Ete-Mir-187  Gga-Mir-187  Gja-Mir-187  Gmo-Mir-187  Hsa-Mir-187  Laf-Mir-187  Lch-Mir-187  Loc-Mir-187  Mal-Mir-187  Mdo-Mir-187  Mml-Mir-187  Mmr-Mir-187  Mmu-Mir-187  Mun-Mir-187  Neu-Mir-187  Oan-Mir-187  Ocu-Mir-187  Pab-Mir-187  Rno-Mir-187  Sha-Mir-187  Spt-Mir-187  Tgu-Mir-187  Tni-Mir-187  Xtr-Mir-187 
Node of Origin (locus) Osteichthyes
Node of Origin (family) Osteichthyes
Genome context
(GCF_000281125.3_ASM28112v4_AMI_add)		 NW_017714011.1: 1380499-1380556 [+] UCSC
Seed CGUGUCU
Precursor
(pre-Mir +30nt flank)		 
GGAUUUUGUCUAACAUAUUGUGAGACCUCCGGCUACAACACAGGACAUGGGAGCUUUUCUGAACCCUCGUGUCUUGUGUUGCAGCCAGAGGGGCACAUCCUUUCAGCAGAGUCCAAGG
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Structure
        10           20        30        40        50        
GGAUUUUGUCUAACAUAU---|   AGA    C    A                AGCUUU 
                     UGUG   CCUC GGCU CAACACAGGACAUGGG      U
                     ACAC   GGAG CCGA GUUGUGUUCUGUGCUC      C
GGAACCUGAGACGACUUUCCU^   GG-    A    C                CCAAGU 
      110       100         90        80        70        60
Deep sequencing
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CommentThere is a second Drosha cut +1 on the 5p arm. The 3' end of the 3p arm is also likely monoadenylated when not monouridylated despite the templated adenosine.
3' NTU Yes
MotifsCNNC at 3p(+17)
Tissue expression
- +
To
Star sequence

Ami-Mir-187_5p* (predicted)
mirBase accessionMIMAT0038200
Sequence 
0- GGCUACAACACAGGACAUGGGA -22
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Mature sequence

Ami-Mir-187_3p
mirBase accessionMIMAT0038201
Sequence 
36- UCGUGUCUUGUGUUGCAGCCAG -58
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