MirGeneDB ID | Bta-Mir-187 |
Family name |
MIR-187 (all species) |
Seed |
CGUGUCU |
Species |
Cow (Bos taurus) |
MiRBase ID |
bta-mir-187
|
Paralogues |
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Orthologues |
Aca-Mir-187
Ami-Mir-187
Cfa-Mir-187
Cli-Mir-187
Cpi-Mir-187
Cpo-Mir-187
Dno-Mir-187
Dre-Mir-187
Ete-Mir-187
Gga-Mir-187
Gja-Mir-187
Gmo-Mir-187
Hsa-Mir-187
Lch-Mir-187
Loc-Mir-187
Mal-Mir-187
Mdo-Mir-187
Mml-Mir-187
Mmu-Mir-187
Mun-Mir-187
Oan-Mir-187
Ocu-Mir-187
Rno-Mir-187
Sha-Mir-187
Spt-Mir-187
Tgu-Mir-187
Tni-Mir-187
Xtr-Mir-187
|
Node of Origin (locus) |
Osteichthyes
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Node of Origin (family) |
Osteichthyes
|
Genome context (GCF_002263795.1_ARS-UCD1.2_BTA) |
NC_037351.1: 21219318-21219375 [+]
UCSC
Ensembl
|
Precursor (pre-Mir +30nt flank) |
GGGCUCCCCACGACACGGUGUGAGACCUCGGGCUACAACACGGGACCCGGGCGCUGCUCCGACCCCUCGUGUCUUGUGUUGCAGCCGGAGGGACGCAAGUCCGCAGCAGAGCCUGCUC
Get precursor sequence
|
Structure | 10 20 30 40 50
GGGCUCCCCACGACACGG---| AGA G A C CGCUGC
UGUG CCUC GGCU CAACACGGGAC CGGG U
ACGC GGAG CCGA GUUGUGUUCUG GCUC C
CUCGUCCGAGACGACGCCUGA^ AG- G C U CCCAGC
110 100 90 80 70 60 |
Deep sequencing |
Go to detailed chart
|
Comment | The 3' end of the 3p arm is also likely monoadenylated when not monouridylated despite the templated adenosine. |
3' NTU |
Yes
|
Motifs | CNNC at 3p(+17) |
Tissue expression
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Ad |
Cd |
Fe |
Bo |
Br |
Ce |
Co |
Co |
De |
He |
Hy |
Ir |
Ki |
La |
Lo |
No |
Op |
Or |
Pe |
Re |
Su |
Te |
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Star sequence |
Bta-Mir-187_5p* (predicted) |
mirBase accession | None |
Sequence |
0- GGCUACAACACGGGACCCGGGC -22
Get sequence
|
Mature sequence |
Bta-Mir-187_3p |
mirBase accession | MIMAT0009248 |
Sequence |
36- UCGUGUCUUGUGUUGCAGCCGG -58
Get sequence
|
Proposed targets |
TargetScanVert: bta-miR-187
|