MirGeneDB ID | Mml-Mir-187 |
Family name |
MIR-187 (all species) |
Seed |
CGUGUCU |
Species |
Rhesus monkey (Macaca mulatta) |
MiRBase ID |
mml-mir-187
|
Paralogues |
|
Orthologues |
Aca-Mir-187
Ami-Mir-187
Bta-Mir-187
Cfa-Mir-187
Cli-Mir-187
Cpi-Mir-187
Cpo-Mir-187
Dno-Mir-187
Dre-Mir-187
Ete-Mir-187
Gga-Mir-187
Gja-Mir-187
Gmo-Mir-187
Hsa-Mir-187
Lch-Mir-187
Loc-Mir-187
Mal-Mir-187
Mdo-Mir-187
Mmu-Mir-187
Mun-Mir-187
Oan-Mir-187
Ocu-Mir-187
Rno-Mir-187
Sha-Mir-187
Spt-Mir-187
Tgu-Mir-187
Tni-Mir-187
Xtr-Mir-187
|
Node of Origin (locus) |
Osteichthyes
|
Node of Origin (family) |
Osteichthyes
|
Genome context (rheMac8_trace) |
chr18: 24590844-24590902 [-]
UCSC
Ensembl
|
Precursor (pre-Mir +30nt flank) |
CAGGCUCACUAUGACACAGUGUGAGACCUCGGGCUACAACACAGGACCCGGGUGCUGCUCUGACCCCUCGUGUCUUGUGUUGCAGCCGGAGGGACGCAGGUCCGCAGCAGAGCCUGUUC
Get precursor sequence
|
Structure | 10 20 30 40 50
CAGGCUCACUAUGACACAG--| AGA G A C UGCUGC
UGUG CCUC GGCU CAACACAGGAC CGGG U
ACGC GGAG CCGA GUUGUGUUCUG GCUC C
CUUGUCCGAGACGACGCCUGG^ AG- G C U CCCAGU
110 100 90 80 70 60 |
Deep sequencing |
Go to detailed chart
|
Comment | There is a second Drosha cut +1 on the 5p arm. The 3' end of the 3p arm is also likely monoadenylated when not monouridylated despite the templated adenosine. |
3' NTU |
Yes
|
Motifs | CNNC at 3p(+17) |
Tissue expression
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Bo |
Br |
Br |
Br |
He |
Ki |
Li |
Lu |
Ly |
Sk |
Sp |
Te |
Th |
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Star sequence |
Mml-Mir-187_5p* |
mirBase accession | MIMAT0026833 |
Sequence |
0- GGGCUACAACACAGGACCCGGGU -23
Get sequence
|
Proposed targets |
TargetScanVert: mml-miR-187-5p
|
Mature sequence |
Mml-Mir-187_3p |
mirBase accession | MIMAT0006221 |
Sequence |
37- UCGUGUCUUGUGUUGCAGCCGG -59
Get sequence
|
Proposed targets |
TargetScanVert: mml-miR-187-3p
|