MirGeneDB 3.0
MirGeneDB ID

Xtr-Mir-187

Family name MIR-187 (all species)
Species Tropical clawed frog (Xenopus tropicalis)
MiRBase ID xtr-mir-187
Paralogues
Orthologues Aca-Mir-187  Ami-Mir-187  Bta-Mir-187  Cfa-Mir-187  Cja-Mir-187  Cli-Mir-187  Cpi-Mir-187  Cpo-Mir-187  Dno-Mir-187  Dre-Mir-187  Eca-Mir-187  Ete-Mir-187  Gga-Mir-187  Gja-Mir-187  Gmo-Mir-187  Hsa-Mir-187  Laf-Mir-187  Lch-Mir-187  Loc-Mir-187  Mal-Mir-187  Mdo-Mir-187  Mml-Mir-187  Mmr-Mir-187  Mmu-Mir-187  Mun-Mir-187  Neu-Mir-187  Oan-Mir-187  Ocu-Mir-187  Pab-Mir-187  Rno-Mir-187  Sha-Mir-187  Spt-Mir-187  Tgu-Mir-187  Tni-Mir-187 
Node of Origin (locus) Osteichthyes
Node of Origin (family) Osteichthyes
Genome context
(xenTro9_add)		 chr6: 35813964-35814022 [-] UCSC Ensembl
Seed CGUGUCU
Precursor
(pre-Mir +30nt flank)		 
UUUUUCUUUGGAAUUUUUUGGUAUACCUUUGGUUACAACACAGGACAUGGGAGCUUACUUGGAACCCUCGUGUCUUGUGUUGCAGCCAGUGGUGGCCAAAUCCAACCUUGCUGUAUGGA
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Structure
        10           20        30        40        50         
UUUUUCUUUGGAAUUUU---|    A    U      A                AGCUUAC 
                    UUGGU UACC UUGGUU CAACACAGGACAUGGG       \
                    AACCG GUGG GACCGA GUUGUGUUCUGUGCUC       U
AGGUAUGUCGUUCCAACCUA^    -    U      C                CCAAGGU 
       110       100         90        80        70        60
Deep sequencing
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CommentThere are Drosha cuts +1 and +2 on the 5p arm. The 3' end of the 3p arm is also likely monoadenylated when not monouridylated despite the templated adenosine.
3' NTU Yes
MotifsNo
Tissue expression
- +
An Br Em Em He Ve
Star sequence

Xtr-Mir-187_5p*
mirBase accessionNone
Sequence 
0- GGUUACAACACAGGACAUGGGA -22
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Mature sequence

Xtr-Mir-187_3p
mirBase accessionMIMAT0003614
Sequence 
37- UCGUGUCUUGUGUUGCAGCCAG -59
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Proposed targets TargetScanVert: xtr-miR-187