Mir-3851-P8a

MirGeneDB ID

Tca-Mir-3851-P8a

Family name

MIR-3851 (all species)

Species

Red flour beetle (Tribolium castaneum)

MiRBase ID

tca-mir-3851m-2

Paralogues

Tca-Mir-3851-P1 Tca-Mir-3851-P2 Tca-Mir-3851-P3 Tca-Mir-3851-P4a Tca-Mir-3851-P4b Tca-Mir-3851-P4c Tca-Mir-3851-P4d Tca-Mir-3851-P5a Tca-Mir-3851-P5b Tca-Mir-3851-P6 Tca-Mir-3851-P7 Tca-Mir-3851-P8b Tca-Mir-3851-P9a Tca-Mir-3851-P9b

Orthologues

Node of Origin (locus)

T. castaneum

Node of Origin (family)

T. castaneum

Genome context
(Tcas5.2)

KQ972170: 24398-24457 [+] Ensembl

Clustered miRNAs
(< 50kb from Mir-3851-P8a)

Mir-11619-P1 KQ972170: 7940-7998 [-] Ensembl
Mir-3-P12b KQ972170: 8053-8111 [-] Ensembl
Mir-11617-P5 KQ972170: 9816-9873 [-] Ensembl
Mir-3851-P4d KQ972170: 11063-11122 [-] Ensembl
Mir-11618-P7 KQ972170: 11485-11543 [-] Ensembl
Mir-11618-P3b KQ972170: 11882-11940 [-] Ensembl
Mir-3851-P8b KQ972170: 12040-12099 [-] Ensembl
Mir-3851-P8a KQ972170: 24398-24457 [+] Ensembl
Mir-11618-P3a KQ972170: 24557-24615 [+] Ensembl
Mir-11618-P8 KQ972170: 25845-25903 [+] Ensembl
Mir-3851-P4c KQ972170: 26268-26327 [+] Ensembl
Mir-11621-P2b KQ972170: 27366-27424 [+] Ensembl
Mir-11617-P4 KQ972170: 27517-27574 [+] Ensembl
Mir-3-P12a KQ972170: 29279-29337 [+] Ensembl
Mir-11619-P2 KQ972170: 29392-29450 [+] Ensembl

Seed

AGUACGA

Precursor
(pre-Mir +30nt flank)

UGUUUUUAUUUUUAAGUAAAUUUAGUACUGGGUUGGCACAGAGUAGUACUAUGUAAAAUUCUAUUCCAUAGUACGACCCAUGUCGGCCCAGUAAGAGAUUCCAAUUCACAAGCAAGUCAU

Get precursor sequence

Structure

        10          20        30        40        50          
UGUUUUUAUUUUUAAGUA--|    AG             CAGA  A        UAAAAU 
                    AAUUU  UACUGGGUUGGCA    GU GUACUAUG      \
                    UUAGA  AUGACCCGGCUGU    CA CAUGAUAC      U
UACUGAACGAACACUUAACC^    GA             ACC-  G        CUUAUC 
.       110       100        90        80         70