Mir-11621-P2b

MirGeneDB ID

Tca-Mir-11621-P2b

Family name

MIR-11621 (all species)

Seed

UAAAGCG

Species

Red flour beetle (Tribolium castaneum)

MiRBase ID

Paralogues

Tca-Mir-11621-P1 Tca-Mir-11621-P2a

Orthologues

Node of Origin (locus)

T. castaneum

Node of Origin (family)

T. castaneum

Genome context
(Tcas5.2)

KQ972170: 27366-27424 [+] Ensembl

Clustered miRNAs
(< 50kb from Mir-11621-P2b)

Mir-11619-P1 KQ972170: 7940-7998 [-] Ensembl
Mir-11617-P5 KQ972170: 9816-9873 [-] Ensembl
Mir-3851-P4d KQ972170: 11063-11122 [-] Ensembl
Mir-11618-P7 KQ972170: 11485-11543 [-] Ensembl
Mir-11618-P3b KQ972170: 11882-11940 [-] Ensembl
Mir-3851-P8b KQ972170: 12040-12099 [-] Ensembl
Mir-3851-P8a KQ972170: 24398-24457 [+] Ensembl
Mir-11618-P3a KQ972170: 24557-24615 [+] Ensembl
Mir-11618-P8 KQ972170: 25845-25903 [+] Ensembl
Mir-3851-P4c KQ972170: 26268-26327 [+] Ensembl
Mir-11617-P4 KQ972170: 27517-27574 [+] Ensembl
Mir-11619-P2 KQ972170: 29392-29450 [+] Ensembl

Precursor
(pre-Mir +30nt flank)

UGACGCAACUUCAACCAACUUUCCUUGAAAAUAAAGCGCAUUUGUCGUUGCAUCCUUAACAUAAAGGCAACGAUUCAGGUGCUUUUCUUUCAAUCAAAGUUAAUACUUCCAGAUUUUGA

Get precursor sequence

Structure

        10          20        30        40        50         
UGACGCAACUUCAACCA--|    CC      AU       AUUU        AUCCUUA 
                   ACUUU  UUGAAA  AAAGCGC    GUCGUUGC       \
                   UGAAA  AACUUU  UUUCGUG    UAGCAACG       A
AGUUUUAGACCUUCAUAAU^    CU      CU       GACU        GAAAUAC 
       110       100        90        80        70        60

Deep sequencing

Go to detailed chart

3' NTU

Motifs

CNNC at 3p(+17)

Tissue expression

Ad	Ea	Em	Em	Em	Em	Em	Fe	Fe	Fe	Fe	Oo

Mature sequence

Tca-Mir-11621-P2b_5p

mirBase accession

None

Sequence

0- AUAAAGCGCAUUUGUCGUUGCA -22

Get sequence

Co-mature sequence

Tca-Mir-11621-P2b_3p

mirBase accession

None

Sequence

37- CAACGAUUCAGGUGCUUUUCUU -59

Get sequence