MirGeneDB 2.1
MirGeneDB ID

Tca-Mir-11618-P3a

Family name MIR-11618 (all species)
Seed UGAUCGG
Species Red flour beetle (Tribolium castaneum)
MiRBase ID tca-mir-11618a-3
Paralogues Tca-Mir-11618-P1  Tca-Mir-11618-P2  Tca-Mir-11618-P3b  Tca-Mir-11618-P4  Tca-Mir-11618-P5  Tca-Mir-11618-P6  Tca-Mir-11618-P7  Tca-Mir-11618-P8 
Orthologues
Node of Origin (locus) T. castaneum
Node of Origin (family) T. castaneum
Genome context
(Tcas5.2)		 KQ972170: 24557-24615 [+] Ensembl
Clustered miRNAs
(< 50kb from Mir-11618-P3a)		 Mir-11619-P1 KQ972170: 7940-7998 [-] Ensembl
Mir-11617-P5 KQ972170: 9816-9873 [-] Ensembl
Mir-3851-P4d KQ972170: 11063-11122 [-] Ensembl
Mir-11618-P7 KQ972170: 11485-11543 [-] Ensembl
Mir-11618-P3b KQ972170: 11882-11940 [-] Ensembl
Mir-3851-P8b KQ972170: 12040-12099 [-] Ensembl
Mir-3851-P8a KQ972170: 24398-24457 [+] Ensembl
Mir-11618-P3a KQ972170: 24557-24615 [+] Ensembl
Mir-11618-P8 KQ972170: 25845-25903 [+] Ensembl
Mir-3851-P4c KQ972170: 26268-26327 [+] Ensembl
Mir-11617-P4 KQ972170: 27517-27574 [+] Ensembl
Mir-11619-P2 KQ972170: 29392-29450 [+] Ensembl
Precursor
(pre-Mir +30nt flank)
ACACAUUUGUACAAAAUGUUUUCGAUAAAUAGUUAGCAUUGGUCGUUUCUAUGCUUCUUCGUGGUCAUUGAUCGGCCAAUGUUCGCUUUAUUUCGAAUCCUCUAACAACUGGAAAAAAU
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Structure
        10        20          30        40        50         
ACACAUUUGUACAAAAUGUU--|    UAAAU   U           UU  U   CUUCU 
                      UUCGA     AGU AGCAUUGGUCG  UC AUG     U
                      AAGCU     UCG UUGUAACCGGC  AG UAC     C
UAAAAAAGGUCAACAAUCUCCU^    UUAUU   C           U-  U   UGGUG 
       110       100        90        80         70        60
Deep sequencing
Go to detailed chart
3' NTU No
MotifsUG at 5p(-14), CNNC at 3p(+17)
Tissue expression
-   +
Ad Ea Em Em Em Em Em Fe Fe Fe Fe Oo
Star sequence

Tca-Mir-11618-P3a_5p*
mirBase accessionMIMAT0045489
Sequence 
0- AGUUAGCAUUGGUCGUUUCUAUG -23
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Mature sequence

Tca-Mir-11618-P3a_3p
mirBase accessionMIMAT0045556
Sequence 
37- UUGAUCGGCCAAUGUUCGCUUU -59
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