MirGeneDB 2.1
MirGeneDB ID

Tca-Mir-11617-P4

Family name MIR-11617 (all species)
Seed AGUACUU
Species Red flour beetle (Tribolium castaneum)
MiRBase ID tca-mir-11617d-2
Paralogues Tca-Mir-11617-P1  Tca-Mir-11617-P2  Tca-Mir-11617-P3  Tca-Mir-11617-P5  Tca-Mir-11617-P6a  Tca-Mir-11617-P6b 
Orthologues
Node of Origin (locus) T. castaneum
Node of Origin (family) T. castaneum
Genome context
(Tcas5.2)		 KQ972170: 27517-27574 [+] Ensembl
Clustered miRNAs
(< 50kb from Mir-11617-P4)		 Mir-11619-P1 KQ972170: 7940-7998 [-] Ensembl
Mir-11617-P5 KQ972170: 9816-9873 [-] Ensembl
Mir-3851-P4d KQ972170: 11063-11122 [-] Ensembl
Mir-11618-P7 KQ972170: 11485-11543 [-] Ensembl
Mir-11618-P3b KQ972170: 11882-11940 [-] Ensembl
Mir-3851-P8b KQ972170: 12040-12099 [-] Ensembl
Mir-3851-P8a KQ972170: 24398-24457 [+] Ensembl
Mir-11618-P3a KQ972170: 24557-24615 [+] Ensembl
Mir-11618-P8 KQ972170: 25845-25903 [+] Ensembl
Mir-3851-P4c KQ972170: 26268-26327 [+] Ensembl
Mir-11617-P4 KQ972170: 27517-27574 [+] Ensembl
Mir-11619-P2 KQ972170: 29392-29450 [+] Ensembl
Precursor
(pre-Mir +30nt flank)
AAAAGUAGACUUCCUCAAAUUCACUGGUGAGUUGGCAUGGGUGGUACUAUAUAGAUCAUAGUAAUUAUAGUACUUUCUAUGGCAACUUAUUAGCGAAUUAAAGUUCACAAUAAAUGAC
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Structure
        10          20        30        40        50        
AAAAGUAGACUUCCUCA--|    A           G      U         UAGAUC 
                   AAUUC CUGGUGAGUUG CAUGGG GGUACUAUA      A
                   UUAAG GAUUAUUCAAC GUAUCU UCAUGAUAU      U
CAGUAAAUAACACUUGAAA^    C           G      U         UAAUGA 
      110       100        90        80        70        60
Deep sequencing
Go to detailed chart
3' NTU No
MotifsNo
Tissue expression
-   +
Ad Ea Em Em Em Em Em Fe Fe Fe Fe Oo
Star sequence

Tca-Mir-11617-P4_5p*
mirBase accessionMIMAT0045598
Sequence 
0- GUUGGCAUGGGUGGUACUAUA -21
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Mature sequence

Tca-Mir-11617-P4_3p
mirBase accessionNone
Sequence 
37- UAGUACUUUCUAUGGCAACUU -58
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