MirGeneDB 3.0

MirGeneDB ID

Tca-Mir-11617-P2

Family name MIR-11617 (all species)
Species Red flour beetle (Tribolium castaneum)
MiRBase ID tca-mir-11617c
Paralogues Tca-Mir-11617-P1  Tca-Mir-11617-P3  Tca-Mir-11617-P4  Tca-Mir-11617-P5  Tca-Mir-11617-P6a  Tca-Mir-11617-P6b 
Orthologues
Node of Origin (locus) T. castaneum
Node of Origin (family) T. castaneum
Genome context
(Tcas5.2)
LG2: 364058-364118 [-] Ensembl
Clustered miRNAs
(< 50kb from Mir-11617-P2)
Mir-11617-P1 LG2: 342479-342539 [-] Ensembl
Mir-3-P9a LG2: 342886-342945 [-] Ensembl
Mir-11617-P2 LG2: 364058-364118 [-] Ensembl
Mir-3-P7-v1 LG2: 364450-364510 [-] Ensembl
Mir-3-P7-v2 LG2: 364450-364510 [-] Ensembl
Mir-3851-P9a LG2: 370015-370074 [-] Ensembl
Mir-3851-P4b LG2: 371022-371081 [+] Ensembl
Mir-11617-P3 LG2: 372276-372333 [+] Ensembl
Mir-11619-P3 LG2: 374318-374376 [+] Ensembl
Seed GUUGGCA
Precursor
(pre-Mir +30nt flank)
CUAAUACAGACGUUUCCGAAUUCACUGUUGAGUUGGCAUAGAGUAGUACUGUAUGGAAUAUGAUAAUUAUUGUACUUCCUAUGACAGCUUACUAAUGAAUUCAAAUUCAAGAAAAUGAUUU
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Structure
        10          20        30        40        50        60
CUAAUACAGACGUUUCC--|      C  U       G     AGU     U   UGGAAU 
                   GAAUUCA UG UGAGUUG CAUAG   AGUAC GUA      A
                   CUUAAGU AU AUUCGAC GUAUC   UCAUG UAU      U
UUUAGUAAAAGAACUUAAA^      A  C       A     CU-     U   UAAUAG 
 .       110       100        90        80         70
Deep sequencing
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3' NTU No
MotifsNo
Tissue expression
- +
Ad Ea Em Em Em Em Em Fe Fe Fe Fe Oo
Mature sequence

Tca-Mir-11617-P2_5p

mirBase accessionMIMAT0045478
Sequence
0- AGUUGGCAUAGAGUAGUACUGUA -23
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Co-mature sequence

Tca-Mir-11617-P2_3p

mirBase accessionMIMAT0045479
Sequence
39- UUGUACUUCCUAUGACAGCUUA -61
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