Mir-11617-P6a

MirGeneDB ID

Tca-Mir-11617-P6a

Family name

MIR-11617 (all species)

Seed

UUGGCAU

Species

Red flour beetle (Tribolium castaneum)

MiRBase ID

tca-mir-11617f-1

Paralogues

Tca-Mir-11617-P1 Tca-Mir-11617-P2 Tca-Mir-11617-P3 Tca-Mir-11617-P4 Tca-Mir-11617-P5 Tca-Mir-11617-P6b

Orthologues

Node of Origin (locus)

T. castaneum

Node of Origin (family)

T. castaneum

Genome context
(Tcas5.2)

LG2: 1146293-1146350 [+] Ensembl

Clustered miRNAs
(< 50kb from Mir-11617-P6a)

Mir-11619-P5 LG2: 1139937-1139997 [+] Ensembl
Mir-11618-P6 LG2: 1141029-1141087 [+] Ensembl
Mir-3851-P5a LG2: 1141446-1141505 [+] Ensembl
Mir-11617-P6b LG2: 1142386-1142443 [+] Ensembl
Mir-11618-P4 LG2: 1143177-1143235 [+] Ensembl
Mir-11619-P4 LG2: 1144051-1144110 [+] Ensembl
Mir-11618-P5 LG2: 1144897-1144955 [+] Ensembl
Mir-3851-P4a LG2: 1145318-1145377 [+] Ensembl
Mir-11621-P1 LG2: 1146138-1146196 [+] Ensembl
Mir-11617-P6a LG2: 1146293-1146350 [+] Ensembl
Mir-11618-P1 LG2: 1147094-1147152 [+] Ensembl

Precursor
(pre-Mir +30nt flank)

GAAAGUAAACUUUCUCAAGUUCACUGGUAACUUGGCAUGGGUGGUACUAUAUGGAUUAUAGUAAUUAUAGUACUUUCUAUGGCAACUUAUUAGUAAAUUAAAGUUCACGAUUAACGAU

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Structure

        10          20        30        40        50        
GAAAGUAAACUUUCUCA--|   C        C   G      U         UGGAUU 
                   AGUU ACUGGUAA UUG CAUGGG GGUACUAUA      A
                   UUAA UGAUUAUU AAC GUAUCU UCAUGAUAU      U
UAGCAAUUAGCACUUGAAA^   A        C   G      U         UAAUGA 
      110       100        90        80        70        60

Deep sequencing

Go to detailed chart

3' NTU

Motifs

Tissue expression

Ad	Ea	Em	Em	Em	Em	Em	Fe	Fe	Fe	Fe	Oo

Mature sequence

Tca-Mir-11617-P6a_5p

mirBase accession

MIMAT0045600

Sequence

0- CUUGGCAUGGGUGGUACUAUA -21

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Star sequence

Tca-Mir-11617-P6a_3p*

mirBase accession

None

Sequence

37- UAGUACUUUCUAUGGCAACUU -58

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