Mir-11617-P1

MirGeneDB ID

Tca-Mir-11617-P1

Family name

MIR-11617 (all species)

Species

Red flour beetle (Tribolium castaneum)

MiRBase ID

tca-mir-11617b

Paralogues

Tca-Mir-11617-P2 Tca-Mir-11617-P3 Tca-Mir-11617-P4 Tca-Mir-11617-P5 Tca-Mir-11617-P6a Tca-Mir-11617-P6b

Orthologues

Node of Origin (locus)

T. castaneum

Node of Origin (family)

T. castaneum

Genome context
(Tcas5.2)

LG2: 342479-342539 [-] Ensembl

Clustered miRNAs
(< 50kb from Mir-11617-P1)

Mir-11617-P1 LG2: 342479-342539 [-] Ensembl
Mir-3-P9a LG2: 342886-342945 [-] Ensembl
Mir-11617-P2 LG2: 364058-364118 [-] Ensembl
Mir-3-P7-v1 LG2: 364450-364510 [-] Ensembl
Mir-3-P7-v2 LG2: 364450-364510 [-] Ensembl
Mir-3851-P9a LG2: 370015-370074 [-] Ensembl
Mir-3851-P4b LG2: 371022-371081 [+] Ensembl
Mir-11617-P3 LG2: 372276-372333 [+] Ensembl
Mir-11619-P3 LG2: 374318-374376 [+] Ensembl

Seed

GUUGUCA

Precursor
(pre-Mir +30nt flank)

CUAAUGUAGACGUUUCCGAAUUCACUGUUAAGUUGUCAUGGAGUAGUACUGUAUGGAAUAUAAUAAUUAUUGUACUUCCUAUGGCAGCUUACUAAUGAAUUCAAAUUCAAGAAAAUGAUUU

Get precursor sequence

Structure

        10          20        30        40        50        60
CUAAUGUAGACGUUUCC--|      C  U             AGU     U   UGGAAU 
                   GAAUUCA UG UAAGUUGUCAUGG   AGUAC GUA      A
                   CUUAAGU AU AUUCGACGGUAUC   UCAUG UAU      U
UUUAGUAAAAGAACUUAAA^      A  C             CU-     U   UAAUAA 
 .       110       100        90        80         70