MirGeneDB 3.0
MirGeneDB ID

Tca-Mir-11617-P3

Family name MIR-11617 (all species)
Species Red flour beetle (Tribolium castaneum)
MiRBase ID tca-mir-11617d-1
Paralogues Tca-Mir-11617-P1  Tca-Mir-11617-P2  Tca-Mir-11617-P4  Tca-Mir-11617-P5  Tca-Mir-11617-P6a  Tca-Mir-11617-P6b 
Orthologues
Node of Origin (locus) T. castaneum
Node of Origin (family) T. castaneum
Genome context
(Tcas5.2)		 LG2: 372276-372333 [+] Ensembl
Clustered miRNAs
(< 50kb from Mir-11617-P3)		 Mir-11617-P1 LG2: 342479-342539 [-] Ensembl
Mir-3-P9a LG2: 342886-342945 [-] Ensembl
Mir-11617-P2 LG2: 364058-364118 [-] Ensembl
Mir-3-P7-v1 LG2: 364450-364510 [-] Ensembl
Mir-3-P7-v2 LG2: 364450-364510 [-] Ensembl
Mir-3851-P9a LG2: 370015-370074 [-] Ensembl
Mir-3851-P4b LG2: 371022-371081 [+] Ensembl
Mir-11617-P3 LG2: 372276-372333 [+] Ensembl
Mir-11619-P3 LG2: 374318-374376 [+] Ensembl
Seed AGUACUU
Precursor
(pre-Mir +30nt flank)		 
AAAAGUAGACUUCCUCAAAUUCACUGGUGAGUUGGCAUGGGUGGUACUAUAUAUAUCAUAGUAAUUAUAGUACUUUCUAUGGCAACUUAUUAGCGAAUUAAAGUUCACAAUAAAUGAC
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Structure
        10          20        30        40        50        
AAAAGUAGACUUCCUCA--|    A           G      U         UAUAUC 
                   AAUUC CUGGUGAGUUG CAUGGG GGUACUAUA      A
                   UUAAG GAUUAUUCAAC GUAUCU UCAUGAUAU      U
CAGUAAAUAACACUUGAAA^    C           G      U         UAAUGA 
      110       100        90        80        70        60
Deep sequencing
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3' NTU No
MotifsNo
Tissue expression
- +
Ad Ea Em Em Em Em Em Fe Fe Fe Fe Oo
Star sequence

Tca-Mir-11617-P3_5p*
mirBase accessionMIMAT0045598
Sequence 
0- GUUGGCAUGGGUGGUACUAUA -21
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Mature sequence

Tca-Mir-11617-P3_3p
mirBase accessionNone
Sequence 
37- UAGUACUUUCUAUGGCAACUU -58
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