Mir-506-P1

MirGeneDB ID

Rno-Mir-506-P1

Family name

MIR-506 (all species)

Species

Norway rat (Rattus norvegicus)

MiRBase ID

rno-mir-509

Paralogues

Rno-Mir-506-P2b Rno-Mir-506-P4 Rno-Mir-506-P5 Rno-Mir-506-P11 Rno-Mir-506-P13 Rno-Mir-506-P14 Rno-Mir-506-P15 Rno-Mir-506-P16 Rno-Mir-506-P17 Rno-Mir-506-P18 Rno-Mir-506-P19 Rno-Mir-506-P21 Rno-Mir-506-P22 Rno-Mir-506-P23 Rno-Mir-506-P24 Rno-Mir-506-P25

Orthologues

Cfa-Mir-506-P1 Cja-Mir-506-P1a Cja-Mir-506-P1b Cja-Mir-506-P1c Cja-Mir-506-P1d Cja-Mir-506-P1e Dno-Mir-506-P1i Dno-Mir-506-P1j Dno-Mir-506-P1k Dno-Mir-506-P1l Eca-Mir-506-P1m Eca-Mir-506-P1n Eca-Mir-506-P1o-v1 Eca-Mir-506-P1p-v1 Hsa-Mir-506-P1a1 Hsa-Mir-506-P1a2 Hsa-Mir-506-P1a3 Hsa-Mir-506-P1b Hsa-Mir-506-P1c1 Hsa-Mir-506-P1c2 Hsa-Mir-506-P1c3 Hsa-Mir-506-P1d Hsa-Mir-506-P1e Laf-Mir-506 Mml-Mir-506-P1a Mml-Mir-506-P1b Mml-Mir-506-P1c4 Mml-Mir-506-P1c5 Mml-Mir-506-P1c6 Mml-Mir-506-P1d Mml-Mir-506-P1e Mmr-Mir-506-P1o1 Mmr-Mir-506-P1o2 Ocu-Mir-506-P1f Ocu-Mir-506-P1g Ocu-Mir-506-P1h Pab-Mir-506-P1a Pab-Mir-506-P1b Pab-Mir-506-P1c7 Pab-Mir-506-P1c8 Pab-Mir-506-P1c9 Pab-Mir-506-P1c10 Pab-Mir-506-P1c11 Pab-Mir-506-P1c12 Pab-Mir-506-P1c13 Pab-Mir-506-P1d Pab-Mir-506-P1e

Node of Origin (locus)

Eutheria

Node of Origin (family)

Eutheria

Genome context
(rn6)

chrX: 155317221-155317277 [+] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-506-P1)

Mir-506-P1 chrX: 155317221-155317277 [+] UCSC Ensembl
Mir-506-P2b chrX: 155338852-155338909 [+] UCSC Ensembl
Mir-506-P4 chrX: 155339151-155339208 [+] UCSC Ensembl
Mir-506-P5 chrX: 155344207-155344263 [+] UCSC Ensembl

Seed

ACUCCAG

Precursor
(pre-Mir +30nt flank)

AGUUGAUCAUGACAACUGUGUGUGGUUCUUUACUCCAGAAUAUGGCAAUCAUGCAUAAUUAAAUGUGAUUGACAUGUCUGCAGUGGAGUAACACAUGCAAUAUAUGGCAUGUGCAGU

Get precursor sequence

Structure

        10          20        30        40        50        
AGUUGAUCAUGACAACU--|      GUU       C    A    G       GCAUA 
                   GUGUGUG   CUUUACU CAGA UAUG CAAUCAU     A
                   CGUACAC   GAGGUGA GUCU GUAC GUUAGUG     U
UGACGUGUACGGUAUAUAA^      AAU       C    -    A       UAAAU 
     110       100        90        80         70        60

Deep sequencing

Go to detailed chart

3' NTU

Motifs

UG at 5p(-14)

Tissue expression

Dr	Dr	Ad	Bi	Bi	Bi	Bi	Br	Br	Br	Br	Ce	Ce	Ce	Ce	Co	Co	Co	Co	Du	Du	Du	Du	Fa	He	He	He	Hi	Hi	Il	Il	Je	Je	Ki	Ki	Ki	Ki	Ki	La	Li	Li	Li	Li	Li	Li	Lu	Me	Me	Mu	Ov	Pa	Pa	Pa	Sk	Sm	So	So	So	So	Sp	St	St	St	St	Te	Te	Th	Ut	Wh

Mature sequence

Rno-Mir-506-P1_5p

mirBase accession

MIMAT0024849

Sequence

0- UACUCCAGAAUAUGGCAAUCAUG -23

Get sequence

Proposed targets

TargetScanVert: rno-miR-509-5p
miRDB: MIMAT0024849

Co-mature sequence

Rno-Mir-506-P1_3p

mirBase accession

MIMAT0024850

Sequence

35- UGAUUGACAUGUCUGCAGUGGA -57

Get sequence

Proposed targets

TargetScanVert: rno-miR-509-3p
miRDB: MIMAT0024850