Mir-506-P1c3

MirGeneDB ID

Hsa-Mir-506-P1c3

Family name

MIR-506 (all species)

Species

Human (Homo sapiens)

MiRBase ID

hsa-mir-509-2

Paralogues

Hsa-Mir-506-P1a1 Hsa-Mir-506-P1a2 Hsa-Mir-506-P1a3 Hsa-Mir-506-P1b Hsa-Mir-506-P1c1 Hsa-Mir-506-P1c2 Hsa-Mir-506-P1d Hsa-Mir-506-P1e Hsa-Mir-506-P2b Hsa-Mir-506-P3 Hsa-Mir-506-P4 Hsa-Mir-506-P5a1 Hsa-Mir-506-P5a2 Hsa-Mir-506-P5b Hsa-Mir-506-P5c Hsa-Mir-506-P6a Hsa-Mir-506-P6b Hsa-Mir-506-P6c Hsa-Mir-506-P6d Hsa-Mir-506-P6e

Orthologues

Cfa-Mir-506-P1 Cja-Mir-506-P1c Laf-Mir-506 Rno-Mir-506-P1

Node of Origin (locus)

H. sapiens

Node of Origin (family)

Eutheria

Genome context
(hg38)

chrX: 147258774-147258831 [-] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-506-P1c3)

Mir-506-P5a2 chrX: 147213498-147213555 [-] UCSC Ensembl
Mir-506-P5a1 chrX: 147225860-147225917 [-] UCSC Ensembl
Mir-506-P4 chrX: 147230753-147230809 [-] UCSC Ensembl
Mir-506-P2b chrX: 147231002-147231059 [-] UCSC Ensembl
Mir-506-P3 chrX: 147236945-147237002 [-] UCSC Ensembl
Mir-506-P1e chrX: 147250161-147250218 [-] UCSC Ensembl
Mir-506-P1d chrX: 147255308-147255368 [-] UCSC Ensembl
Mir-506-P1c3 chrX: 147258774-147258831 [-] UCSC Ensembl
Mir-506-P1c2 chrX: 147259661-147259717 [-] UCSC Ensembl
Mir-506-P1c1 chrX: 147260549-147260606 [-] UCSC Ensembl
Mir-506-P1b chrX: 147272342-147272399 [-] UCSC Ensembl
Mir-506-P1a3 chrX: 147279266-147279323 [-] UCSC Ensembl
Mir-506-P1a1 chrX: 147281957-147282014 [-] UCSC Ensembl
Mir-506-P1a2 chrX: 147284655-147284712 [-] UCSC Ensembl

Seed

GAUUGGU

Precursor
(pre-Mir +30nt flank)

CCAUCCUCAGACAUGCUGUGUGUGGUACCCUACUGCAGACAGUGGCAAUCAUGUAUAAUUAAAAAUGAUUGGUACGUCUGUGGGUAGAGUACUGCAUGACACGUGCAACAUACAUGAU

Get precursor sequence

Structure

        10          20        30         40        50        
CCAUCCUCAGACAUGCU-  -   UG    C   -|UG     A   G       GUAUA 
                  GU GUG  GUAC CUA C  CAGAC GUG CAAUCAU     A
                  CA UAC  CAUG GAU G  GUCUG CAU GUUAGUA     U
UAGUACAUACAACGUGCA  G   GU    A   G^GU     -   G       AAAAU 
      110       100        90        80         70        60

Deep sequencing

Go to detailed chart

3' NTU

Motifs

UG at 5p(-14), CNNC at 3p(+17)

Tissue expression

Dc	Dc	Dr	Dr	Xp	Xp	Bl	Br	Br	Ce	Ce	Co	Fo	He	Ki	Le	Li	Li	Lu	Pa	Pl	Pl	Sk	Sk	Sk	Sm	Sp	Sp	St	Te	Th	Ut

Star sequence

Hsa-Mir-506-P1c3_5p*

mirBase accession

MIMAT0004779

Sequence

0- UACUGCAGACAGUGGCAAUCAUG -23

Get sequence

Proposed targets

microrna.org: MIMAT0004779
TargetScanVert: hsa-miR-509-5p
TargetMiner: hsa-miR-509-5p
miRDB: MIMAT0004779

Mature sequence

Hsa-Mir-506-P1c3_3p

mirBase accession

MIMAT0002881

Sequence

35- UGAUUGGUACGUCUGUGGGUAGA -58

Get sequence

Proposed targets

microrna.org: MIMAT0002881
TargetScanVert: hsa-miR-509-3p
TargetMiner: hsa-miR-509-3p
miRDB: MIMAT0002881