Mir-506-P3

MirGeneDB ID

Hsa-Mir-506-P3

Family name

MIR-506 (all species)

Species

Human (Homo sapiens)

MiRBase ID

hsa-mir-508

Paralogues

Hsa-Mir-506-P1a1 Hsa-Mir-506-P1a2 Hsa-Mir-506-P1a3 Hsa-Mir-506-P1b Hsa-Mir-506-P1c1 Hsa-Mir-506-P1c2 Hsa-Mir-506-P1c3 Hsa-Mir-506-P1d Hsa-Mir-506-P1e Hsa-Mir-506-P2b Hsa-Mir-506-P4 Hsa-Mir-506-P5a1 Hsa-Mir-506-P5a2 Hsa-Mir-506-P5b Hsa-Mir-506-P5c Hsa-Mir-506-P6a Hsa-Mir-506-P6b Hsa-Mir-506-P6c Hsa-Mir-506-P6d Hsa-Mir-506-P6e

Orthologues

Bta-Mir-506-P3 Cfa-Mir-506-P3a Cfa-Mir-506-P3b Cja-Mir-506-P3 Dno-Mir-506-P3 Eca-Mir-506-P3 Laf-Mir-506 Mml-Mir-506-P3 Mmr-Mir-506-P3 Ocu-Mir-506-P3 Pab-Mir-506-P3

Node of Origin (locus)

Eutheria

Node of Origin (family)

Eutheria

Genome context
(hg38)

chrX: 147236945-147237002 [-] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-506-P3)

Mir-506-P5c chrX: 147189717-147189774 [-] UCSC Ensembl
Mir-506-P5b chrX: 147199057-147199114 [-] UCSC Ensembl
Mir-506-P5a2 chrX: 147213498-147213555 [-] UCSC Ensembl
Mir-506-P5a1 chrX: 147225860-147225917 [-] UCSC Ensembl
Mir-506-P4 chrX: 147230753-147230809 [-] UCSC Ensembl
Mir-506-P2b chrX: 147231002-147231059 [-] UCSC Ensembl
Mir-506-P3 chrX: 147236945-147237002 [-] UCSC Ensembl
Mir-506-P1e chrX: 147250161-147250218 [-] UCSC Ensembl
Mir-506-P1d chrX: 147255308-147255368 [-] UCSC Ensembl
Mir-506-P1c3 chrX: 147258774-147258831 [-] UCSC Ensembl
Mir-506-P1c2 chrX: 147259661-147259717 [-] UCSC Ensembl
Mir-506-P1c1 chrX: 147260549-147260606 [-] UCSC Ensembl
Mir-506-P1b chrX: 147272342-147272399 [-] UCSC Ensembl
Mir-506-P1a3 chrX: 147279266-147279323 [-] UCSC Ensembl
Mir-506-P1a1 chrX: 147281957-147282014 [-] UCSC Ensembl
Mir-506-P1a2 chrX: 147284655-147284712 [-] UCSC Ensembl

Seed

GAUUGUA

Precursor
(pre-Mir +30nt flank)

AGCCACCACCUUCAGCUGAGUGUAGUGCCCUACUCCAGAGGGCGUCACUCAUGUAAACUAAAACAUGAUUGUAGCCUUUUGGAGUAGAGUAAUACACAUCACGUAACGCAUAUUUGGU

Get precursor sequence

Structure

        10          20        30        40        50        
AGCCACCACCUUCAGCU-  -|    G   C              GU  C     UAAA 
                  GA GUGUA UGC CUACUCCAGAGGGC  CA UCAUG    C
                  CU CACAU AUG GAUGAGGUUUUCCG  GU AGUAC    U
UGGUUUAUACGCAAUGCA  A^    A   A              AU  U     AAAA 
      110       100        90        80        70        60

Deep sequencing

Go to detailed chart

3' NTU

Motifs

UG at 5p(-14)

Tissue expression

Dc	Dc	Dr	Dr	Xp	Xp	Bl	Br	Br	Ce	Ce	Co	Fo	He	Ki	Le	Li	Li	Lu	Pa	Pl	Pl	Sk	Sk	Sk	Sm	Sp	Sp	St	Te	Th	Ut

Star sequence

Hsa-Mir-506-P3_5p*

mirBase accession

MIMAT0004778

Sequence

0- UACUCCAGAGGGCGUCACUCAUG -23

Get sequence

Proposed targets

microrna.org: MIMAT0004778
TargetScanVert: hsa-miR-508-5p
TargetMiner: hsa-miR-508-5p
miRDB: MIMAT0004778

Mature sequence

Hsa-Mir-506-P3_3p

mirBase accession

MIMAT0002880

Sequence

35- UGAUUGUAGCCUUUUGGAGUAGA -58

Get sequence

Proposed targets

microrna.org: MIMAT0002880
TargetScanVert: hsa-miR-508-3p
TargetMiner: hsa-miR-508-3p
miRDB: MIMAT0002880