MirGeneDB 3.0
MirGeneDB ID

Ocu-Mir-506-P3

Family name MIR-506 (all species)
Species Rabbit (Oryctolagus cuniculus)
MiRBase ID ocu-mir-508
Paralogues Ocu-Mir-506-P1f  Ocu-Mir-506-P1g  Ocu-Mir-506-P1h  Ocu-Mir-506-P2a  Ocu-Mir-506-P4  Ocu-Mir-506-P5 
Orthologues Bta-Mir-506-P3  Cfa-Mir-506-P3a  Cfa-Mir-506-P3b  Cja-Mir-506-P3  Dno-Mir-506-P3  Eca-Mir-506-P3  Hsa-Mir-506-P3  Laf-Mir-506  Mml-Mir-506-P3  Mmr-Mir-506-P3  Pab-Mir-506-P3 
Node of Origin (locus) Eutheria
Node of Origin (family) Eutheria
Genome context
(oryCun2_add)		 chrUn0002: 10705716-10705773 [-] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-506-P3)		 Mir-506-P5 chrUn0002: 10678464-10678522 [-] UCSC Ensembl
Mir-506-P1h chrUn0002: 10687771-10687828 [-] UCSC Ensembl
Mir-506-P4 chrUn0002: 10694554-10694611 [-] UCSC Ensembl
Mir-506-P3 chrUn0002: 10705716-10705773 [-] UCSC Ensembl
Mir-506-P2a chrUn0002: 10707176-10707233 [-] UCSC Ensembl
Mir-506-P1g chrUn0002: 10711587-10711644 [-] UCSC Ensembl
Mir-506-P1f chrUn0002: 10723771-10723827 [-] UCSC Ensembl
Seed UUGUCAC
Precursor
(pre-Mir +30nt flank)		 
GGUCACCACCUCCACUUGAAUGUAGUGCCCUACUCCAGAGGGUGUCACUCACAUUGCCUAAAGCAUGAUUGUCACCUUUUUGAGUAGAGCAAUACAUAGCAUUUACGUUCUGUGUGAU
Get precursor sequence
Structure
        10          20        30        40        50        
GGUCACCACCUCCACUUGA--|    G   C      C        U  C   CAUUGC 
                     AUGUA UGC CUACUC AGAGGGUG CA UCA      C
                     UACAU ACG GAUGAG UUUUCCAC GU AGU      U
UAGUGUGUCUUGCAUUUACGA^    A   A      U        U  U   ACGAAA 
      110       100        90        80        70        60
Deep sequencing
Go to detailed chart
3' NTU No
MotifsUG at 5p(-14)
Tissue expression
- +
He Ki Te To Wh
Star sequence

Ocu-Mir-506-P3_5p* (predicted)
mirBase accessionMIMAT0048509
Sequence 
0- UACUCCAGAGGGUGUCACUCA -21
Get sequence
Mature sequence

Ocu-Mir-506-P3_3p
mirBase accessionMIMAT0048510
Sequence 
37- AUUGUCACCUUUUUGAGUAGA -58
Get sequence