MirGeneDB 3.0
MirGeneDB ID

Pab-Mir-506-P3

Family name MIR-506 (all species)
Species Sumatran orangutan (Pongo abelii)
MiRBase ID
Paralogues Pab-Mir-506-P1a  Pab-Mir-506-P1b  Pab-Mir-506-P1c7  Pab-Mir-506-P1c8  Pab-Mir-506-P1c9  Pab-Mir-506-P1c10  Pab-Mir-506-P1c11  Pab-Mir-506-P1c12  Pab-Mir-506-P1c13  Pab-Mir-506-P1d  Pab-Mir-506-P1e  Pab-Mir-506-P2b  Pab-Mir-506-P4  Pab-Mir-506-P5o5  Pab-Mir-506-P5o6  Pab-Mir-506-P5o7  Pab-Mir-506-P5o8  Pab-Mir-506-P6a  Pab-Mir-506-P6b  Pab-Mir-506-P6c  Pab-Mir-506-P6d  Pab-Mir-506-P6e 
Orthologues Bta-Mir-506-P3  Cfa-Mir-506-P3a  Cfa-Mir-506-P3b  Cja-Mir-506-P3  Dno-Mir-506-P3  Eca-Mir-506-P3  Hsa-Mir-506-P3  Laf-Mir-506  Mml-Mir-506-P3  Mmr-Mir-506-P3  Ocu-Mir-506-P3 
Node of Origin (locus) Eutheria
Node of Origin (family) Eutheria
Genome context
(GCA_028885655.2_NHGRI_mPonAbe1-v2.0_traces)		 CM054702.2: 153502614-153502671 [-] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-506-P3)		 Mir-506-P5o8 CM054702.2: 153458779-153458836 [-] UCSC Ensembl
Mir-506-P5o7 CM054702.2: 153467634-153467691 [-] UCSC Ensembl
Mir-506-P5o6 CM054702.2: 153482115-153482172 [-] UCSC Ensembl
Mir-506-P5o5 CM054702.2: 153491537-153491594 [-] UCSC Ensembl
Mir-506-P4 CM054702.2: 153496308-153496364 [-] UCSC Ensembl
Mir-506-P2b CM054702.2: 153496557-153496614 [-] UCSC Ensembl
Mir-506-P3 CM054702.2: 153502614-153502671 [-] UCSC Ensembl
Mir-506-P1e CM054702.2: 153515734-153515791 [-] UCSC Ensembl
Mir-506-P1d CM054702.2: 153527142-153527202 [-] UCSC Ensembl
Mir-506-P1c10 CM054702.2: 153532425-153532482 [-] UCSC Ensembl
Mir-506-P1c9 CM054702.2: 153533312-153533369 [-] UCSC Ensembl
Mir-506-P1c11 CM054702.2: 153536859-153536916 [-] UCSC Ensembl
Mir-506-P1c7 CM054702.2: 153537745-153537802 [-] UCSC Ensembl
Mir-506-P1b CM054702.2: 153552186-153552245 [-] UCSC Ensembl
Seed GAUUGUA
Precursor
(pre-Mir +30nt flank)		 
GGCCACCACCUUCAGCUGAGUGUAGUGCCCUACUCCAGAGGGCGUCACUCACGUAAACUAAAACAUGAUUGUAGCCUUUUUGAGUAGAGUAAUACACAUCACGUAAGGCAUAUUUGAU
Get precursor sequence
Structure
        10          20        30        40        50        
GGCCACCACCUUCAGCU-  -|    G   C      C       GU  C   C UAAA 
                  GA GUGUA UGC CUACUC AGAGGGC  CA UCA G    C
                  CU CACAU AUG GAUGAG UUUUCCG  GU AGU C    U
UAGUUUAUACGGAAUGCA  A^    A   A      U       AU  U   A AAAA 
      110       100        90        80        70        60
Deep sequencing
3' NTU Unknown
MotifsUG at 5p(-14)
Tissue expression
- +
Br Br Li Li
Star sequence

Pab-Mir-506-P3_5p* (predicted)
mirBase accessionNone
Sequence 
0- UACUCCAGAGGGCGUCACUCACG -23
Get sequence
Mature sequence

Pab-Mir-506-P3_3p (predicted)
mirBase accessionNone
Sequence 
35- UGAUUGUAGCCUUUUUGAGUAGA -58
Get sequence