MirGeneDB 3.0
MirGeneDB ID

Pab-Mir-506-P2b

Family name MIR-506 (all species)
Species Sumatran orangutan (Pongo abelii)
MiRBase ID
Paralogues Pab-Mir-506-P1a  Pab-Mir-506-P1b  Pab-Mir-506-P1c7  Pab-Mir-506-P1c8  Pab-Mir-506-P1c9  Pab-Mir-506-P1c10  Pab-Mir-506-P1c11  Pab-Mir-506-P1c12  Pab-Mir-506-P1c13  Pab-Mir-506-P1d  Pab-Mir-506-P1e  Pab-Mir-506-P3  Pab-Mir-506-P4  Pab-Mir-506-P5o5  Pab-Mir-506-P5o6  Pab-Mir-506-P5o7  Pab-Mir-506-P5o8  Pab-Mir-506-P6a  Pab-Mir-506-P6b  Pab-Mir-506-P6c  Pab-Mir-506-P6d  Pab-Mir-506-P6e 
Orthologues Bta-Mir-506-P2b1  Bta-Mir-506-P2b2  Cfa-Mir-506-P2b  Cpo-Mir-506-P2b  Dno-Mir-506-P2b  Eca-Mir-506-P2b3  Eca-Mir-506-P2b4  Hsa-Mir-506-P2b  Laf-Mir-506  Mml-Mir-506-P2b  Mmr-Mir-506-P2b  Mmu-Mir-506-P2b  Rno-Mir-506-P2b 
Node of Origin (locus) Eutheria
Node of Origin (family) Eutheria
Genome context
(GCA_028885655.2_NHGRI_mPonAbe1-v2.0_traces)		 CM054702.2: 153496557-153496614 [-] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-506-P2b)		 Mir-506-P5o8 CM054702.2: 153458779-153458836 [-] UCSC Ensembl
Mir-506-P5o7 CM054702.2: 153467634-153467691 [-] UCSC Ensembl
Mir-506-P5o6 CM054702.2: 153482115-153482172 [-] UCSC Ensembl
Mir-506-P5o5 CM054702.2: 153491537-153491594 [-] UCSC Ensembl
Mir-506-P4 CM054702.2: 153496308-153496364 [-] UCSC Ensembl
Mir-506-P2b CM054702.2: 153496557-153496614 [-] UCSC Ensembl
Mir-506-P3 CM054702.2: 153502614-153502671 [-] UCSC Ensembl
Mir-506-P1e CM054702.2: 153515734-153515791 [-] UCSC Ensembl
Mir-506-P1d CM054702.2: 153527142-153527202 [-] UCSC Ensembl
Mir-506-P1c10 CM054702.2: 153532425-153532482 [-] UCSC Ensembl
Mir-506-P1c9 CM054702.2: 153533312-153533369 [-] UCSC Ensembl
Mir-506-P1c11 CM054702.2: 153536859-153536916 [-] UCSC Ensembl
Mir-506-P1c7 CM054702.2: 153537745-153537802 [-] UCSC Ensembl
Seed UUUGCAC
Precursor
(pre-Mir +30nt flank)		 
ACAUUUUCCGCUGUGCUGUGUGUAGUGCUUCACUUCAAGAAGUGCCAUGCAUGUGUCUAGAAAUAUGUUUUGCACCUUUUGGAGUGAAAUAAUGCACAACAGGUACAAGUCAGAACUA
Get precursor sequence
Structure
        10          20        30        40        50        
ACAUUUUCCGCUGUGCUG--|     G  C            A    CAU   UGUGUC 
                    UGUGUA UG UUCACUUCAAGA GUGC   GCA      U
                    ACACGU AU AAGUGAGGUUUU CACG   UGU      A
AUCAAGACUGAACAUGGACA^     A  A            C    UUU   AUAAAG 
      110       100        90        80        70        60
Deep sequencing
3' NTU Unknown
MotifsUG at 5p(-14), UGUG in loop
Tissue expression
- +
Br Br Li Li
Star sequence

Pab-Mir-506-P2b_5p* (predicted)
mirBase accessionNone
Sequence 
0- CACUUCAAGAAGUGCCAUGCA -21
Get sequence
Mature sequence

Pab-Mir-506-P2b_3p (predicted)
mirBase accessionNone
Sequence 
37- UUUUGCACCUUUUGGAGUGAA -58
Get sequence