Mir-506-P2b2

MirGeneDB ID

Bta-Mir-506-P2b2

Family name

MIR-506 (all species)

Species

Cow (Bos taurus)

MiRBase ID

Paralogues

Bta-Mir-506-P2a Bta-Mir-506-P2b1 Bta-Mir-506-P3 Bta-Mir-506-P4b Bta-Mir-506-P5

Orthologues

Cfa-Mir-506-P2b Cpo-Mir-506-P2b Dno-Mir-506-P2b Hsa-Mir-506-P2b Laf-Mir-506 Mml-Mir-506-P2b Mmr-Mir-506-P2b Mmu-Mir-506-P2b Pab-Mir-506-P2b Rno-Mir-506-P2b

Node of Origin (locus)

B. taurus

Node of Origin (family)

Eutheria

Genome context
(GCF_002263795.1_ARS-UCD1.2_BTA)

NC_037357.1: 29994643-29994700 [-] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-506-P2b2)

Mir-506-P5 NC_037357.1: 29980078-29980135 [-] UCSC Ensembl
Mir-506-P4b NC_037357.1: 29994350-29994407 [-] UCSC Ensembl
Mir-506-P2b2 NC_037357.1: 29994643-29994700 [-] UCSC Ensembl
Mir-506-P2b1 NC_037357.1: 29998359-29998416 [-] UCSC Ensembl
Mir-506-P3 NC_037357.1: 30015441-30015498 [-] UCSC Ensembl
Mir-506-P2a NC_037357.1: 30020600-30020657 [-] UCSC Ensembl

Seed

ACUUCAG

Precursor
(pre-Mir +30nt flank)

CCACGUUUCACUAUGCUGCGUGCAGUGCUGCACUUCAGGAAGUGCCAUCCAUGUGGAUAGAAAUAUGAUUGGCAUUUCUUAGAGUGGAGCAAUACACAGCAAAUCCAUCAGUGCUGAC

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Structure

        10          20        30        40        50        
CCACGUUUCACUAUGCU-  -|  CAG    G    UC           UC  UGUGGA 
                  GC GUG   UGCU CACU  AGGAAGUGCCA  CA      U
                  CG CAC   ACGA GUGA  UUCUUUACGGU  GU      A
CAGUCGUGACUACCUAAA  A^  AUA    G    GA           UA  AUAAAG 
      110       100        90        80        70        60

Deep sequencing

Go to detailed chart

3' NTU

Unknown

Motifs

UG at 5p(-14), CNNC at 3p(+17), UGUG in loop

Tissue expression

Ad	Bo	Br	Ce	Co	Co	De	Fe	He	Hy	Ir	Ki	La	Lo	Mi	No	Op	Or	Pe	Re	Su	Te

Mature sequence

Bta-Mir-506-P2b2_5p (predicted)

mirBase accession

None

Sequence

0- CACUUCAGGAAGUGCCAUCCA -21

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Star sequence

Bta-Mir-506-P2b2_3p* (predicted)

mirBase accession

None

Sequence

37- AUUGGCAUUUCUUAGAGUGGA -58

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