Mir-506-P5

MirGeneDB ID

Bta-Mir-506-P5

Family name

MIR-506 (all species)

Species

Cow (Bos taurus)

MiRBase ID

Paralogues

Bta-Mir-506-P2a Bta-Mir-506-P2b1 Bta-Mir-506-P2b2 Bta-Mir-506-P3 Bta-Mir-506-P4b

Orthologues

Cja-Mir-506-P5d1 Cja-Mir-506-P5d2 Cpo-Mir-506-P5 Ete-Mir-506-P5d Ete-Mir-506-P5e Hsa-Mir-506-P5a1 Hsa-Mir-506-P5a2 Hsa-Mir-506-P5b Hsa-Mir-506-P5c Laf-Mir-506 Mml-Mir-506-P5o1 Mml-Mir-506-P5o2 Mml-Mir-506-P5o3 Mml-Mir-506-P5o4a Mml-Mir-506-P5o4b Mmr-Mir-506-P5 Ocu-Mir-506-P5 Pab-Mir-506-P5o5 Pab-Mir-506-P5o6 Pab-Mir-506-P5o7 Pab-Mir-506-P5o8 Rno-Mir-506-P5

Node of Origin (locus)

Eutheria

Node of Origin (family)

Eutheria

Genome context
(GCF_002263795.1_ARS-UCD1.2_BTA)

NC_037357.1: 29980078-29980135 [-] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-506-P5)

Mir-506-P5 NC_037357.1: 29980078-29980135 [-] UCSC Ensembl
Mir-506-P4b NC_037357.1: 29994350-29994407 [-] UCSC Ensembl
Mir-506-P2b2 NC_037357.1: 29994643-29994700 [-] UCSC Ensembl
Mir-506-P2b1 NC_037357.1: 29998359-29998416 [-] UCSC Ensembl
Mir-506-P3 NC_037357.1: 30015441-30015498 [-] UCSC Ensembl
Mir-506-P2a NC_037357.1: 30020600-30020657 [-] UCSC Ensembl

Seed

UCAUAGG

Precursor
(pre-Mir +30nt flank)

CCACACUAAGCCAUUCAGUGUACAGUGCCUUUCAUAGGAAGGUGUCAUUCAUGUGGUCUACAAUUUGAAUGCCACUUUUUUGUGAAGAGUAAUGUACAACAUGCAGGGCAUGGUGGUA

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Structure

        10          20        30        40        50        
CCACACUAAGCCAUUCAG--|     G   C               U      UGUGGU 
                    UGUACA UGC UUUCAUAGGAAGGUG CAUUCA      C
                    ACAUGU AUG GAAGUGUUUUUUCAC GUAAGU      U
AUGGUGGUACGGGACGUACA^     A   A               C      UUAACA 
      110       100        90        80        70        60

Deep sequencing

Go to detailed chart

3' NTU

Motifs

UGUG in loop

Tissue expression

Ad	Bo	Br	Ce	Co	Co	De	Fe	He	Hy	Ir	Ki	La	Lo	Mi	No	Op	Or	Pe	Re	Su	Te

Mature sequence

Bta-Mir-506-P5_5p

mirBase accession

None

Sequence

0- UUCAUAGGAAGGUGUCAUUCA -21

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Star sequence

Bta-Mir-506-P5_3p*

mirBase accession

None

Sequence

37- AAUGCCACUUUUUUGUGAAGA -58

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