Mir-506-P5o4b

MirGeneDB ID

Mml-Mir-506-P5o4b

Family name

MIR-506 (all species)

Species

Rhesus monkey (Macaca mulatta)

MiRBase ID

mml-mir-513b-1

Paralogues

Mml-Mir-506-P1a Mml-Mir-506-P1b Mml-Mir-506-P1c4 Mml-Mir-506-P1c5 Mml-Mir-506-P1c6 Mml-Mir-506-P1d Mml-Mir-506-P1e Mml-Mir-506-P2b Mml-Mir-506-P3 Mml-Mir-506-P4 Mml-Mir-506-P5o1 Mml-Mir-506-P5o2 Mml-Mir-506-P5o3 Mml-Mir-506-P5o4a Mml-Mir-506-P6a Mml-Mir-506-P6b Mml-Mir-506-P6c Mml-Mir-506-P6d Mml-Mir-506-P6e

Orthologues

Bta-Mir-506-P5 Cpo-Mir-506-P5 Laf-Mir-506 Mmr-Mir-506-P5 Ocu-Mir-506-P5 Rno-Mir-506-P5

Node of Origin (locus)

M. mulatta

Node of Origin (family)

Eutheria

Genome context
(GCA_003339765.3_Mmul_10_traces)

CM014356.1: 143239333-143239390 [-] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-506-P5o4b)

Mir-506-P5o4a CM014356.1: 143232188-143232245 [-] UCSC Ensembl
Mir-506-P5o4b CM014356.1: 143239333-143239390 [-] UCSC Ensembl
Mir-506-P5o3 CM014356.1: 143252920-143252977 [-] UCSC Ensembl
Mir-506-P5o2 CM014356.1: 143261882-143261939 [-] UCSC Ensembl
Mir-506-P5o1 CM014356.1: 143270447-143270504 [-] UCSC Ensembl
Mir-506-P4 CM014356.1: 143275369-143275425 [-] UCSC Ensembl
Mir-506-P2b CM014356.1: 143275695-143275752 [-] UCSC Ensembl
Mir-506-P3 CM014356.1: 143281565-143281622 [-] UCSC Ensembl
Mir-506-P1e CM014356.1: 143285603-143285660 [-] UCSC Ensembl

Seed

UCACAAG

Precursor
(pre-Mir +30nt flank)

CCACAUUCAGCCAUUCAGUGUGCAGUGCCUUUCACAAGGAGGUGUCAUUUAUGUGAACUAAACUAUAAAUGUCACCUUUUUGGGAAGAGUAAUGUACAAGAUGCACUGCAUAUGUGGU

Get precursor sequence

Structure

        10          20         30        40        50        
CCACAUUCAGCCAUUCAG--      G   -|    A          U       GUGAA 
                    UGUGCA UGC CUUUC CAAGGAGGUG CAUUUAU     C
                    ACAUGU AUG GAAGG GUUUUUCCAC GUAAAUA     U
UGGUGUAUACGUCACGUAGA      A   A^    -          U       UCAAA 
      110       100        90         80        70        60

Deep sequencing

Go to detailed chart

3' NTU

Motifs

CNNC at 3p(+17), UGUG in loop

Tissue expression

Bo	Br	Br	Br	He	Ki	Li	Lu	Ly	Sk	Sp	Te	Th

Mature sequence

Mml-Mir-506-P5o4b_5p

mirBase accession

MIMAT0005767

Sequence

0- UUCACAAGGAGGUGUCAUUUAU -22

Get sequence

Proposed targets

TargetScanVert: mml-miR-513b

Star sequence

Mml-Mir-506-P5o4b_3p*

mirBase accession

None

Sequence

36- AAAUGUCACCUUUUUGGGAAGA -58

Get sequence