Mir-506-P4b

MirGeneDB ID

Bta-Mir-506-P4b

Family name

MIR-506 (all species)

Species

Cow (Bos taurus)

MiRBase ID

Paralogues

Bta-Mir-506-P2a Bta-Mir-506-P2b1 Bta-Mir-506-P2b2 Bta-Mir-506-P3 Bta-Mir-506-P5

Orthologues

Cfa-Mir-506-P4b Cja-Mir-506-P4 Cpo-Mir-506-P4 Dno-Mir-506-P4 Eca-Mir-506-P4b Hsa-Mir-506-P4 Laf-Mir-506 Mml-Mir-506-P4 Mmr-Mir-506-P4 Mmu-Mir-506-P4 Ocu-Mir-506-P4 Pab-Mir-506-P4 Rno-Mir-506-P4

Node of Origin (locus)

Scrotifera

Node of Origin (family)

Eutheria

Genome context
(GCF_002263795.1_ARS-UCD1.2_BTA)

NC_037357.1: 29994350-29994407 [-] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-506-P4b)

Mir-506-P5 NC_037357.1: 29980078-29980135 [-] UCSC Ensembl
Mir-506-P4b NC_037357.1: 29994350-29994407 [-] UCSC Ensembl
Mir-506-P2b2 NC_037357.1: 29994643-29994700 [-] UCSC Ensembl
Mir-506-P2b1 NC_037357.1: 29998359-29998416 [-] UCSC Ensembl
Mir-506-P3 NC_037357.1: 30015441-30015498 [-] UCSC Ensembl
Mir-506-P2a NC_037357.1: 30020600-30020657 [-] UCSC Ensembl

Seed

ACUUAGG

Precursor
(pre-Mir +30nt flank)

CCACCUUCACCUGUGUUUUGCUCAGUGCCCUACUUAGGAAGGCGUUAUUCACUUAUAUUGAAUUUUGAAAGGCAUCUCUCUGAGUGUAGCAAUGUGUAAUAUGAACAACAUUUGAGGU

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Structure

        10          20        30        40        50        
CCACCUUCACCUGUGUU--|   U  G   CC       GA  GC  UA    CUUAUA 
                   UUGC CA UGC  UACUUAG  AG  GU  UUCA      U
                   AAUG GU ACG  GUGAGUC  UC  CG  AAGU      U
UGGAGUUUACAACAAGUAU^   U  A   AU       UC  UA  GA    UUUAAG 
      110       100        90        80        70        60

Deep sequencing

3' NTU

Unknown

Motifs

CNNC at 3p(+17)

Tissue expression

Ad	Bo	Br	Ce	Co	Co	De	Fe	He	Hy	Ir	Ki	La	Lo	Mi	No	Op	Or	Pe	Re	Su	Te

Mature sequence

Bta-Mir-506-P4b_5p (predicted)

mirBase accession

None

Sequence

0- UACUUAGGAAGGCGUUAUUCA -21

Get sequence

Star sequence

Bta-Mir-506-P4b_3p* (predicted)

mirBase accession

None

Sequence

37- AAAGGCAUCUCUCUGAGUGUA -58

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