MirGeneDB 3.0

MirGeneDB ID

Eca-Mir-506-P4b

Family name MIR-506 (all species)
Species Horse (Equus caballus)
MiRBase ID eca-mir-506a
Paralogues Eca-Mir-506-P1m  Eca-Mir-506-P1n  Eca-Mir-506-P1o-v1  Eca-Mir-506-P1p-v1  Eca-Mir-506-P2a  Eca-Mir-506-P2b3  Eca-Mir-506-P2b4  Eca-Mir-506-P3  Eca-Mir-506-P4a  Eca-Mir-506-P28a  Eca-Mir-506-P28b  Eca-Mir-506-P28c-v1  Eca-Mir-506-P28d1  Eca-Mir-506-P28d2  Eca-Mir-506-P28e1  Eca-Mir-506-P28e2  Eca-Mir-506-P28f1  Eca-Mir-506-P28f2  Eca-Mir-506-P28f3  Eca-Mir-506-P29a1  Eca-Mir-506-P29a2  Eca-Mir-506-P29b  Eca-Mir-506-P30a  Eca-Mir-506-P30b1-v1  Eca-Mir-506-P30b2-v1  Eca-Mir-506-P30c1  Eca-Mir-506-P30c2  Eca-Mir-506-P30d  Eca-Mir-506-P31a  Eca-Mir-506-P31b  Eca-Mir-506-P31c  Eca-Mir-506-P32  Eca-Mir-506-P33a  Eca-Mir-506-P33b1  Eca-Mir-506-P33b2  Eca-Mir-506-P34  Eca-Mir-506-P35a-v1  Eca-Mir-506-P35b1-v1  Eca-Mir-506-P35b2-v1  Eca-Mir-506-P35c-v1 
Orthologues Bta-Mir-506-P4b  Cfa-Mir-506-P4b  Cja-Mir-506-P4  Cpo-Mir-506-P4  Dno-Mir-506-P4  Hsa-Mir-506-P4  Laf-Mir-506  Mml-Mir-506-P4  Mmr-Mir-506-P4  Mmu-Mir-506-P4  Ocu-Mir-506-P4  Pab-Mir-506-P4  Rno-Mir-506-P4 
Node of Origin (locus) Scrotifera
Node of Origin (family) Eutheria
Genome context
(GCA_002863925.1_EquCab3.0)
CM009179.1: 120853343-120853400 [-] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-506-P4b)
Mir-506-P1p-v2 CM009179.1: 120848454-120848514 [-] UCSC Ensembl
Mir-506-P1p-v1 CM009179.1: 120848454-120848514 [-] UCSC Ensembl
Mir-506-P1p-v3 CM009179.1: 120848456-120848512 [-] UCSC Ensembl
Mir-506-P4b CM009179.1: 120853343-120853400 [-] UCSC Ensembl
Mir-506-P2b3 CM009179.1: 120853655-120853712 [-] UCSC Ensembl
Mir-506-P3 CM009179.1: 120863542-120863599 [-] UCSC Ensembl
Mir-506-P2a CM009179.1: 120869779-120869836 [-] UCSC Ensembl
Mir-506-P1o-v2 CM009179.1: 120880989-120881048 [-] UCSC Ensembl
Mir-506-P1o-v1 CM009179.1: 120880989-120881048 [-] UCSC Ensembl
Mir-506-P1o-v3 CM009179.1: 120880991-120881047 [-] UCSC Ensembl
Mir-506-P1n CM009179.1: 120886562-120886618 [-] UCSC Ensembl
Mir-506-P1m CM009179.1: 120891676-120891733 [-] UCSC Ensembl
Mir-506-P4a CM009179.1: 120894697-120894754 [-] UCSC Ensembl
Mir-506-P2b4 CM009179.1: 120897861-120897918 [-] UCSC Ensembl
Seed GAAUGGC
Precursor
(pre-Mir +30nt flank)
GUCACCUUCAGCUACGUUUGUUCAGUGCCUUACUCAGGGAGGCGUUGUUCACAUAGAUUGGUAUAUGAAUGGCACCUUUCUGAGUAGAGUAAUGUGCAACAUGGACAACGUUUGUGGU
Get precursor sequence
Structure
        10          20        30        40        50        
GUCACCUUCAGCUACGU--|   U  G   C        GG   C  UG    CAUAGA 
                   UUGU CA UGC UUACUCAG  AGG GU  UUCA      U
                   AACG GU AUG GAUGAGUC  UCC CG  AAGU      U
UGGUGUUUGCAACAGGUAC^   U  A   A        UU   A  GU    AUAUGG 
      110       100        90        80        70        60
Deep sequencing
Go to detailed chart
3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
- +
Ps Bo Ca Em En En En En En En En Gl He He Ho Im Ki Li Lo Lu Ma Ma Mi Pl Sp Te Tr Ut Ut Yo
Star sequence

Eca-Mir-506-P4b_5p*

mirBase accessionNone
Sequence
0- UACUCAGGGAGGCGUUGUUCACA -23
Get sequence
Mature sequence

Eca-Mir-506-P4b_3p

mirBase accessionMIMAT0034707
Sequence
35- UGAAUGGCACCUUUCUGAGUAGA -58
Get sequence