MirGeneDB 3.0

MirGeneDB ID

Eca-Mir-506-P28a

Family name

MIR-506 (all species)

Species

Horse (Equus caballus)

MiRBase ID

eca-mir-8908b-1

Paralogues

Eca-Mir-506-P1m Eca-Mir-506-P1n Eca-Mir-506-P1o-v1 Eca-Mir-506-P1p-v1 Eca-Mir-506-P2a Eca-Mir-506-P2b3 Eca-Mir-506-P2b4 Eca-Mir-506-P3 Eca-Mir-506-P4a Eca-Mir-506-P4b Eca-Mir-506-P28b Eca-Mir-506-P28c-v1 Eca-Mir-506-P28d1 Eca-Mir-506-P28d2 Eca-Mir-506-P28e1 Eca-Mir-506-P28e2 Eca-Mir-506-P28f1 Eca-Mir-506-P28f2 Eca-Mir-506-P28f3 Eca-Mir-506-P29a1 Eca-Mir-506-P29a2 Eca-Mir-506-P29b Eca-Mir-506-P30a Eca-Mir-506-P30b1-v1 Eca-Mir-506-P30b2-v1 Eca-Mir-506-P30c1 Eca-Mir-506-P30c2 Eca-Mir-506-P30d Eca-Mir-506-P31a Eca-Mir-506-P31b Eca-Mir-506-P31c Eca-Mir-506-P32 Eca-Mir-506-P33a Eca-Mir-506-P33b1 Eca-Mir-506-P33b2 Eca-Mir-506-P34 Eca-Mir-506-P35a-v1 Eca-Mir-506-P35b1-v1 Eca-Mir-506-P35b2-v1 Eca-Mir-506-P35c-v1

Orthologues

Laf-Mir-506

Node of Origin (locus)

E. caballus

Node of Origin (family)

Eutheria

Genome context
(GCA_002863925.1_EquCab3.0)

CM009179.1: 119919773-119919828 [-] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-506-P28a)

Mir-506-P29b CM009179.1: 119897644-119897700 [-] UCSC Ensembl
Mir-506-P35c-v1 CM009179.1: 119898154-119898210 [-] UCSC Ensembl
Mir-506-P35c-v2 CM009179.1: 119898154-119898210 [-] UCSC Ensembl
Mir-506-P28f3 CM009179.1: 119898661-119898716 [-] UCSC Ensembl
Mir-506-P30c2 CM009179.1: 119899177-119899232 [-] UCSC Ensembl
Mir-506-P31c CM009179.1: 119900206-119900262 [-] UCSC Ensembl
Mir-506-P28e2 CM009179.1: 119901226-119901285 [-] UCSC Ensembl
Mir-506-P30b2-v2 CM009179.1: 119901738-119901793 [-] UCSC Ensembl
Mir-506-P30b2-v1 CM009179.1: 119901738-119901793 [-] UCSC Ensembl
Mir-506-P35b1-v2 CM009179.1: 119903093-119903149 [-] UCSC Ensembl
Mir-506-P35b1-v1 CM009179.1: 119903093-119903149 [-] UCSC Ensembl
Mir-506-P28f2 CM009179.1: 119904407-119904462 [-] UCSC Ensembl
Mir-506-P30d CM009179.1: 119904923-119904978 [-] UCSC Ensembl
Mir-506-P31a CM009179.1: 119905948-119906004 [-] UCSC Ensembl
Mir-506-P28e1 CM009179.1: 119906900-119906959 [-] UCSC Ensembl
Mir-506-P30b1-v1 CM009179.1: 119907412-119907467 [-] UCSC Ensembl
Mir-506-P30b1-v2 CM009179.1: 119907412-119907467 [-] UCSC Ensembl
Mir-506-P29a2 CM009179.1: 119908248-119908304 [-] UCSC Ensembl
Mir-506-P35b2-v2 CM009179.1: 119908765-119908821 [-] UCSC Ensembl
Mir-506-P35b2-v1 CM009179.1: 119908765-119908821 [-] UCSC Ensembl
Mir-506-P28d2 CM009179.1: 119909277-119909332 [-] UCSC Ensembl
Mir-506-P33b2 CM009179.1: 119910132-119910192 [-] UCSC Ensembl
Mir-506-P35a-v2 CM009179.1: 119910651-119910707 [-] UCSC Ensembl
Mir-506-P35a-v1 CM009179.1: 119910654-119910704 [-] UCSC Ensembl
Mir-506-P28d1 CM009179.1: 119911163-119911218 [-] UCSC Ensembl
Mir-506-P33b1 CM009179.1: 119912012-119912072 [-] UCSC Ensembl
Mir-506-P28f1 CM009179.1: 119913038-119913093 [-] UCSC Ensembl
Mir-506-P30c1 CM009179.1: 119913554-119913609 [-] UCSC Ensembl
Mir-506-P31b CM009179.1: 119914584-119914640 [-] UCSC Ensembl
Mir-506-P28c-v1 CM009179.1: 119915529-119915588 [-] UCSC Ensembl
Mir-506-P28c-v2 CM009179.1: 119915531-119915586 [-] UCSC Ensembl
Mir-542-v2 CM009179.1: 119915531-119915586 [-] UCSC Ensembl
Mir-506-P30a CM009179.1: 119916031-119916088 [-] UCSC Ensembl
Mir-506-P29a1 CM009179.1: 119916886-119916942 [-] UCSC Ensembl
Mir-506-P28b CM009179.1: 119917914-119917969 [-] UCSC Ensembl
Mir-506-P34 CM009179.1: 119918769-119918825 [-] UCSC Ensembl
Mir-506-P28a CM009179.1: 119919773-119919828 [-] UCSC Ensembl
Mir-506-P33a CM009179.1: 119921797-119921853 [-] UCSC Ensembl
Mir-506-P32 CM009179.1: 119922309-119922365 [-] UCSC Ensembl
Mir-9142 CM009179.1: 119927864-119927920 [-] UCSC Ensembl

Seed

Precursor
(pre-Mir +30nt flank)

UCAACUUGAGCCAUGCUGUGUGCAGUGCCCUACCCGGUAGGUACUGAUCACUUAGCCUACGUGUAAUUAGUACCUGUCUGGGUAGAGUAAGGCCAACAAGAACAACAUUUGAGGAG

Get precursor sequence

Structure

        10           20        30         40        50       
UCAACUUGAGCCAUGCUG---| U  AG   C        -           C  UUAGC 
                     UG GC  UGC CUACCCGG UAGGUACUGAU AC     \
                     AC CG  AUG GAUGGGUC GUCCAUGAUUA UG     C
GAGGAGUUUACAACAAGAACA^ -  GA   A        U           A  UGCAU 
    110       100         90        80        70        60

Deep sequencing

Go to detailed chart

3' NTU

No

Motifs

UG at 5p(-14), CNNC at 3p(+17)

Tissue expression

-

+

Ps	Bo	Ca	Em	En	En	En	En	En	En	En	Gl	He	He	Ho	Im	Ki	Li	Lo	Lu	Ma	Ma	Mi	Pl	Sp	Te	Tr	Ut	Ut	Yo

Star sequence

Eca-Mir-506-P28a_5p*

mirBase accession

None

Sequence

0- UACCCGGUAGGUACUGAUCACU -22

Get sequence

Mature sequence

Eca-Mir-506-P28a_3p

mirBase accession

Sequence

34- AAUUAGUACCUGUCUGGGUAGA -56

Get sequence