Mir-506-P2a

MirGeneDB ID

Eca-Mir-506-P2a

Family name

MIR-506 (all species)

Species

Horse (Equus caballus)

MiRBase ID

eca-mir-507b

Paralogues

Eca-Mir-506-P1m Eca-Mir-506-P1n Eca-Mir-506-P1o-v1 Eca-Mir-506-P1p-v1 Eca-Mir-506-P2b3 Eca-Mir-506-P2b4 Eca-Mir-506-P3 Eca-Mir-506-P4a Eca-Mir-506-P4b Eca-Mir-506-P28a Eca-Mir-506-P28b Eca-Mir-506-P28c-v1 Eca-Mir-506-P28d1 Eca-Mir-506-P28d2 Eca-Mir-506-P28e1 Eca-Mir-506-P28e2 Eca-Mir-506-P28f1 Eca-Mir-506-P28f2 Eca-Mir-506-P28f3 Eca-Mir-506-P29a1 Eca-Mir-506-P29a2 Eca-Mir-506-P29b Eca-Mir-506-P30a Eca-Mir-506-P30b1-v1 Eca-Mir-506-P30b2-v1 Eca-Mir-506-P30c1 Eca-Mir-506-P30c2 Eca-Mir-506-P30d Eca-Mir-506-P31a Eca-Mir-506-P31b Eca-Mir-506-P31c Eca-Mir-506-P32 Eca-Mir-506-P33a Eca-Mir-506-P33b1 Eca-Mir-506-P33b2 Eca-Mir-506-P34 Eca-Mir-506-P35a-v1 Eca-Mir-506-P35b1-v1 Eca-Mir-506-P35b2-v1 Eca-Mir-506-P35c-v1

Orthologues

Bta-Mir-506-P2a Cfa-Mir-506-P2a Cja-Mir-506-P2a Cpo-Mir-506-P2a1 Cpo-Mir-506-P2a2 Laf-Mir-506 Mmr-Mir-506-P2a Ocu-Mir-506-P2a

Node of Origin (locus)

Eutheria

Node of Origin (family)

Eutheria

Genome context
(GCA_002863925.1_EquCab3.0)

CM009179.1: 120869779-120869836 [-] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-506-P2a)

Mir-506-P1p-v2 CM009179.1: 120848454-120848514 [-] UCSC Ensembl
Mir-506-P1p-v1 CM009179.1: 120848454-120848514 [-] UCSC Ensembl
Mir-506-P1p-v3 CM009179.1: 120848456-120848512 [-] UCSC Ensembl
Mir-506-P4b CM009179.1: 120853343-120853400 [-] UCSC Ensembl
Mir-506-P2b3 CM009179.1: 120853655-120853712 [-] UCSC Ensembl
Mir-506-P3 CM009179.1: 120863542-120863599 [-] UCSC Ensembl
Mir-506-P2a CM009179.1: 120869779-120869836 [-] UCSC Ensembl
Mir-506-P1o-v2 CM009179.1: 120880989-120881048 [-] UCSC Ensembl
Mir-506-P1o-v1 CM009179.1: 120880989-120881048 [-] UCSC Ensembl
Mir-506-P1o-v3 CM009179.1: 120880991-120881047 [-] UCSC Ensembl
Mir-506-P1n CM009179.1: 120886562-120886618 [-] UCSC Ensembl
Mir-506-P1m CM009179.1: 120891676-120891733 [-] UCSC Ensembl
Mir-506-P4a CM009179.1: 120894697-120894754 [-] UCSC Ensembl
Mir-506-P2b4 CM009179.1: 120897861-120897918 [-] UCSC Ensembl

Seed

UUGGCAC

Precursor
(pre-Mir +30nt flank)

CUACAUUUAACCAUACUGUGUGCAGUGCUCCACUCCAAAGAGUGCCAUUCAGGUGUAGGAAAGUAUGAUUGGCACUUUUUUGAGUGUGGUAAUUCACAACAUAUACGACCACAUGUGU

Get precursor sequence

Structure

        10          20        30        40        50        
CUACAUUUAACCAUACUG--|   CAG   UC     C           U   GGUGUA 
                    UGUG   UGC  CACUC AAAGAGUGCCA UCA      G
                    ACAC   AUG  GUGAG UUUUUCACGGU AGU      G
UGUGUACACCAGCAUAUACA^   UUA   GU     U           U   AUGAAA 
      110       100        90        80        70        60

Deep sequencing

Go to detailed chart

3' NTU

Motifs

UG at 5p(-14), CNNC at 3p(+17)

Tissue expression

Ps	Bo	Ca	Em	En	En	En	En	En	En	En	Gl	He	He	Ho	Im	Ki	Li	Lo	Lu	Ma	Ma	Mi	Pl	Sp	Te	Tr	Ut	Ut	Yo

Star sequence

Eca-Mir-506-P2a_5p* (predicted)

mirBase accession

None

Sequence

0- CACUCCAAAGAGUGCCAUUCA -21

Get sequence

Mature sequence

Eca-Mir-506-P2a_3p

mirBase accession

MIMAT0034699

Sequence

37- AUUGGCACUUUUUUGAGUGUG -58

Get sequence