Mir-506-P2a1

MirGeneDB ID

Cpo-Mir-506-P2a1

Family name

MIR-506 (all species)

Species

Guinea pig (Cavia porcellus)

MiRBase ID

cpo-mir-507a

Paralogues

Cpo-Mir-506-P2a2 Cpo-Mir-506-P2b Cpo-Mir-506-P4 Cpo-Mir-506-P5 Cpo-Mir-506-P26a Cpo-Mir-506-P26b Cpo-Mir-506-P26c Cpo-Mir-506-P26d Cpo-Mir-506-P26e Cpo-Mir-506-P26f Cpo-Mir-506-P26g Cpo-Mir-506-P27a Cpo-Mir-506-P27b Cpo-Mir-506-P27c

Orthologues

Bta-Mir-506-P2a Cfa-Mir-506-P2a Cja-Mir-506-P2a Eca-Mir-506-P2a Laf-Mir-506 Mmr-Mir-506-P2a Ocu-Mir-506-P2a

Node of Origin (locus)

C. porcellus

Node of Origin (family)

Eutheria

Genome context
(cavPor3)

scaffold_84: 2762224-2762281 [+] UCSC

Clustered miRNAs
(< 50kb from Mir-506-P2a1)

Mir-506-P26b scaffold_84: 2715444-2715500 [+] UCSC
Mir-506-P26c scaffold_84: 2722022-2722078 [+] UCSC
Mir-506-P26d scaffold_84: 2725364-2725420 [+] UCSC
Mir-506-P26e scaffold_84: 2739521-2739577 [+] UCSC
Mir-506-P26f scaffold_84: 2748262-2748318 [+] UCSC
Mir-506-P26g scaffold_84: 2752734-2752794 [+] UCSC
Mir-506-P2a1 scaffold_84: 2762224-2762281 [+] UCSC
Mir-506-P2a2 scaffold_84: 2763265-2763322 [+] UCSC
Mir-506-P2b scaffold_84: 2771646-2771702 [+] UCSC
Mir-506-P5 scaffold_84: 2797729-2797786 [+] UCSC

Seed

CUGGCAC

Precursor
(pre-Mir +30nt flank)

CCAUGUGCCGUUAGGCUUUGUGCGGUGCUUCACUCAAAAAGGUGCCAUUCAGGUAAAUUAAAAUAUGACUGGCACAUUUUUGAGUGCAGUAGUACACAACAUUUGCAGUAGUUUAAAC

Get precursor sequence

Structure

        10          20        30        40        50        
CCAUGUGCCGUUAGGCU--|    CGG    U          G      U  AGGUAAA 
                   UUGUG   UGCU CACUCAAAAA GUGCCA UC       U
                   AACAC   AUGA GUGAGUUUUU CACGGU AG       U
CAAAUUUGAUGACGUUUAC^    AUG    C          A      C  UAUAAAA 
      110       100        90        80        70        60