MirGeneDB 3.0
MirGeneDB ID

Cpo-Mir-506-P27b

Family name MIR-506 (all species)
Species Guinea pig (Cavia porcellus)
MiRBase ID
Paralogues Cpo-Mir-506-P2a1  Cpo-Mir-506-P2a2  Cpo-Mir-506-P2b  Cpo-Mir-506-P4  Cpo-Mir-506-P5  Cpo-Mir-506-P26a  Cpo-Mir-506-P26b  Cpo-Mir-506-P26c  Cpo-Mir-506-P26d  Cpo-Mir-506-P26e  Cpo-Mir-506-P26f  Cpo-Mir-506-P26g  Cpo-Mir-506-P27a  Cpo-Mir-506-P27c 
Orthologues Laf-Mir-506 
Node of Origin (locus) C. porcellus
Node of Origin (family) Eutheria
Genome context
(cavPor3)		 scaffold_84: 3932651-3932706 [+] UCSC
Clustered miRNAs
(< 50kb from Mir-506-P27b)		 Mir-506-P27a scaffold_84: 3931993-3932049 [+] UCSC
Mir-506-P27b scaffold_84: 3932651-3932706 [+] UCSC
Mir-506-P27c scaffold_84: 3933561-3933617 [+] UCSC
Seed ACCAAGA
Precursor
(pre-Mir +30nt flank)		 
GAGAGCACCUGCGCGCUGUGUGCUGUGCCUUACUCAGAGUAGCAUUGGUUACUUAGACUAUAGUCACCAAGACCUCUCUGAGUAGAGUAAAGCUCACUAUUUCCCUUGCUUUUAGU
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Structure
        10          20        30        40         50       
GAGAGCACCUGCGCGCU--|  U   G   C          U  CA-     U  UUAG 
                   GUG GCU UGC UUACUCAGAG AG   UUGGU AC    A
                   CAC CGA AUG GAUGAGUCUC UC   AACCA UG    C
UGAUUUUCGUUCCCUUUAU^  U   A   A          -  CAG     C  AUAU 
    110       100        90        80         70        60
Deep sequencing
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3' NTU No
MotifsUG at 5p(-14)
Tissue expression
- +
Bl Bl Bl Bl Oo Oo Oo Oo To Wh
Star sequence

Cpo-Mir-506-P27b_5p* (predicted)
mirBase accessionNone
Sequence 
0- UACUCAGAGUAGCAUUGGUUAC -22
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Mature sequence

Cpo-Mir-506-P27b_3p
mirBase accessionNone
Sequence 
34- CACCAAGACCUCUCUGAGUAGA -56
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