MirGeneDB 3.0
MirGeneDB ID

Cpo-Mir-506-P27c

Family name MIR-506 (all species)
Species Guinea pig (Cavia porcellus)
MiRBase ID cpo-mir-12077
Paralogues Cpo-Mir-506-P2a1  Cpo-Mir-506-P2a2  Cpo-Mir-506-P2b  Cpo-Mir-506-P4  Cpo-Mir-506-P5  Cpo-Mir-506-P26a  Cpo-Mir-506-P26b  Cpo-Mir-506-P26c  Cpo-Mir-506-P26d  Cpo-Mir-506-P26e  Cpo-Mir-506-P26f  Cpo-Mir-506-P26g  Cpo-Mir-506-P27a  Cpo-Mir-506-P27b 
Orthologues Laf-Mir-506 
Node of Origin (locus) C. porcellus
Node of Origin (family) Eutheria
Genome context
(cavPor3)		 scaffold_84: 3933561-3933617 [+] UCSC
Clustered miRNAs
(< 50kb from Mir-506-P27c)		 Mir-506-P27a scaffold_84: 3931993-3932049 [+] UCSC
Mir-506-P27b scaffold_84: 3932651-3932706 [+] UCSC
Mir-506-P27c scaffold_84: 3933561-3933617 [+] UCSC
Seed ACUGAGG
Precursor
(pre-Mir +30nt flank)		 
CCUGCACACUGUGUUCUGUGUGCCAUGCUUUGCUCAGAGUUGCGUCGGUUACUUAGAGUAUACGUAACUGAGGCCACUCUGGGUAGAGUAAGGCUCACUAAAUAUAACUCUUCUACU
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Structure
        10          20        30        40        50        
CCUGCACACUGUGUUCU--|  U   A               U  G        UUAGA 
                   GUG GCC UGCUUUGCUCAGAGU GC UCGGUUAC     \
                   CAC CGG AUGAGAUGGGUCUCA CG AGUCAAUG     G
UCAUCUUCUCAAUAUAAAU^  U   A               C  G        CAUAU 
     110       100        90        80        70        60
Deep sequencing
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3' NTU No
MotifsUG at 5p(-14)
Tissue expression
- +
Bl Bl Bl Bl Oo Oo Oo Oo To Wh
Star sequence

Cpo-Mir-506-P27c_5p*
mirBase accessionMIMAT0047455
Sequence 
0- UGCUCAGAGUUGCGUCGGUUAC -22
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Mature sequence

Cpo-Mir-506-P27c_3p
mirBase accessionMIMAT0047456
Sequence 
35- AACUGAGGCCACUCUGGGUAGA -57
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