MirGeneDB 3.0
MirGeneDB ID

Eca-Mir-506-P1p

Family name MIR-506 (all species)
Species Horse (Equus caballus)
MiRBase ID eca-mir-514a
Paralogues Eca-Mir-506-P1m  Eca-Mir-506-P1n  Eca-Mir-506-P1o-v1  Eca-Mir-506-P1p-v1  Eca-Mir-506-P2a  Eca-Mir-506-P2b3  Eca-Mir-506-P2b4  Eca-Mir-506-P3  Eca-Mir-506-P4a  Eca-Mir-506-P4b  Eca-Mir-506-P28a  Eca-Mir-506-P28b  Eca-Mir-506-P28c-v1  Eca-Mir-506-P28d1  Eca-Mir-506-P28d2  Eca-Mir-506-P28e1  Eca-Mir-506-P28e2  Eca-Mir-506-P28f1  Eca-Mir-506-P28f2  Eca-Mir-506-P28f3  Eca-Mir-506-P29a1  Eca-Mir-506-P29a2  Eca-Mir-506-P29b  Eca-Mir-506-P30a  Eca-Mir-506-P30b1-v1  Eca-Mir-506-P30b2-v1  Eca-Mir-506-P30c1  Eca-Mir-506-P30c2  Eca-Mir-506-P30d  Eca-Mir-506-P31a  Eca-Mir-506-P31b  Eca-Mir-506-P31c  Eca-Mir-506-P32  Eca-Mir-506-P33a  Eca-Mir-506-P33b1  Eca-Mir-506-P33b2  Eca-Mir-506-P34  Eca-Mir-506-P35a-v1  Eca-Mir-506-P35b1-v1  Eca-Mir-506-P35b2-v1  Eca-Mir-506-P35c-v1 
Orthologues Cfa-Mir-506-P1  Laf-Mir-506  Rno-Mir-506-P1 
Node of Origin (locus) E. caballus
Node of Origin (family) Eutheria
Genome context
(GCA_002863925.1_EquCab3.0)		 CM009179.1: 120848456-120848512 [-] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-506-P1p-v3)		 Mir-506-P1p-v2 CM009179.1: 120848454-120848514 [-] UCSC Ensembl
Mir-506-P1p-v1 CM009179.1: 120848454-120848514 [-] UCSC Ensembl
Mir-506-P1p-v3 CM009179.1: 120848456-120848512 [-] UCSC Ensembl
Mir-506-P4b CM009179.1: 120853343-120853400 [-] UCSC Ensembl
Mir-506-P2b3 CM009179.1: 120853655-120853712 [-] UCSC Ensembl
Mir-506-P3 CM009179.1: 120863542-120863599 [-] UCSC Ensembl
Mir-506-P2a CM009179.1: 120869779-120869836 [-] UCSC Ensembl
Mir-506-P1o-v2 CM009179.1: 120880989-120881048 [-] UCSC Ensembl
Mir-506-P1o-v1 CM009179.1: 120880989-120881048 [-] UCSC Ensembl
Mir-506-P1o-v3 CM009179.1: 120880991-120881047 [-] UCSC Ensembl
Mir-506-P1n CM009179.1: 120886562-120886618 [-] UCSC Ensembl
Mir-506-P1m CM009179.1: 120891676-120891733 [-] UCSC Ensembl
Mir-506-P4a CM009179.1: 120894697-120894754 [-] UCSC Ensembl
Mir-506-P2b4 CM009179.1: 120897861-120897918 [-] UCSC Ensembl
Variant

Eca-Mir-506-P1p-v3
Seed GAUUGAC
Precursor
(pre-Mir +30nt flank)		 
CAUCCUUAGACAUGCUGUGUGCAUUACCUCACUCCGGAAAGUGUCAAUCAUGUAUAACUAAAUAUGAUUGACACCUCUGUGAGUGGAGUAACGCCAGCUAUAUGCAACAUAUACAAU
Get precursor sequence
Structure
        10            20        30         40        50       
CAUCCUUAGACAUGCUG----| U  A    CU     -    AA            UAUA 
                     UG GC UUAC  CACUC CGGA  GUGUCAAUCAUG    A
                     AC CG AAUG  GUGAG GUCU  CACAGUUAGUAU    C
UAACAUAUACAACGUAUAUCG^ -  C    AG     U    C-            AAAU 
     110       100         90        80         70        60
Deep sequencing
Go to detailed chart
3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
- +
Ps Bo Ca Em En En En En En En En Gl He He Ho Im Ki Li Lo Lu Ma Ma Mi Pl Sp Te Tr Ut Ut Yo
Star sequence

Eca-Mir-506-P1p-v3_5p*
mirBase accessionMIMAT0034715
Sequence 
0- ACUCCGGAAAGUGUCAAUCAUG -22
Get sequence
Mature sequence

Eca-Mir-506-P1p-v3_3p
mirBase accessionNone
Sequence 
34- UGAUUGACACCUCUGUGAGUGGA -57
Get sequence
Variant

Eca-Mir-506-P1p-v1
Seed UGACACC
Precursor
(pre-Mir +30nt flank)		 
GCCAUCCUUAGACAUGCUGUGUGCAUUACCUCACUCCGGAAAGUGUCAAUCAUGUAUAACUAAAUAUGAUUGACACCUCUGUGAGUGGAGUAACGCCAGCUAUAUGCAACAUAUACAAUAG
Get precursor sequence
Structure
        10            20        30         40        50         
GCCAUCCUUAGACAUGCUG----| U  A    CU     -    AA         AUGUAUA 
                       UG GC UUAC  CACUC CGGA  GUGUCAAUC       A
                       AC CG AAUG  GUGAG GUCU  CACAGUUAG       C
GAUAACAUAUACAACGUAUAUCG^ -  C    AG     U    C-         UAUAAAU 
 .       110       100         90        80         70        60
Deep sequencing
Go to detailed chart
3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
- +
Ps Bo Ca Em En En En En En En En Gl He He Ho Im Ki Li Lo Lu Ma Ma Mi Pl Sp Te Tr Ut Ut Yo
Star sequence

Eca-Mir-506-P1p-v1_5p*
mirBase accessionMIMAT0034715
Sequence 
0- UCACUCCGGAAAGUGUCAAUC -21
Get sequence
Mature sequence

Eca-Mir-506-P1p-v1_3p
mirBase accessionNone
Sequence 
39- UUGACACCUCUGUGAGUGGAGU -61
Get sequence
Variant

Eca-Mir-506-P1p-v2
Seed UUGACAC
Precursor
(pre-Mir +30nt flank)		 
GCCAUCCUUAGACAUGCUGUGUGCAUUACCUCACUCCGGAAAGUGUCAAUCAUGUAUAACUAAAUAUGAUUGACACCUCUGUGAGUGGAGUAACGCCAGCUAUAUGCAACAUAUACAAUAG
Get precursor sequence
Structure
        10            20        30         40        50         
GCCAUCCUUAGACAUGCUG----| U  A    CU     -    AA          UGUAUA 
                       UG GC UUAC  CACUC CGGA  GUGUCAAUCA      A
                       AC CG AAUG  GUGAG GUCU  CACAGUUAGU      C
GAUAACAUAUACAACGUAUAUCG^ -  C    AG     U    C-          AUAAAU 
 .       110       100         90        80         70        60
Deep sequencing
Go to detailed chart
3' NTU No
MotifsCNNC at 3p(+17), UGUG in loop
Tissue expression
- +
Ps Bo Ca Em En En En En En En En Gl He He Ho Im Ki Li Lo Lu Ma Ma Mi Pl Sp Te Tr Ut Ut Yo
Star sequence

Eca-Mir-506-P1p-v2_5p*
mirBase accessionMIMAT0034715
Sequence 
0- UCACUCCGGAAAGUGUCAAUCA -22
Get sequence
Mature sequence

Eca-Mir-506-P1p-v2_3p
mirBase accessionNone
Sequence 
38- AUUGACACCUCUGUGAGUGGAGU -61
Get sequence