MirGeneDB 3.0
MirGeneDB ID

Cfa-Mir-506-P1

Family name MIR-506 (all species)
Species Dog (Canis familiaris)
MiRBase ID cfa-mir-514
Paralogues Cfa-Mir-506-P2a  Cfa-Mir-506-P2b  Cfa-Mir-506-P3a  Cfa-Mir-506-P3b  Cfa-Mir-506-P4b 
Orthologues Cja-Mir-506-P1a  Cja-Mir-506-P1b  Cja-Mir-506-P1c  Cja-Mir-506-P1d  Cja-Mir-506-P1e  Dno-Mir-506-P1i  Dno-Mir-506-P1j  Dno-Mir-506-P1k  Dno-Mir-506-P1l  Eca-Mir-506-P1m  Eca-Mir-506-P1n  Eca-Mir-506-P1o-v1  Eca-Mir-506-P1p-v1  Hsa-Mir-506-P1a1  Hsa-Mir-506-P1a2  Hsa-Mir-506-P1a3  Hsa-Mir-506-P1b  Hsa-Mir-506-P1c1  Hsa-Mir-506-P1c2  Hsa-Mir-506-P1c3  Hsa-Mir-506-P1d  Hsa-Mir-506-P1e  Laf-Mir-506  Mml-Mir-506-P1a  Mml-Mir-506-P1b  Mml-Mir-506-P1c4  Mml-Mir-506-P1c5  Mml-Mir-506-P1c6  Mml-Mir-506-P1d  Mml-Mir-506-P1e  Mmr-Mir-506-P1o1  Mmr-Mir-506-P1o2  Ocu-Mir-506-P1f  Ocu-Mir-506-P1g  Ocu-Mir-506-P1h  Pab-Mir-506-P1a  Pab-Mir-506-P1b  Pab-Mir-506-P1c7  Pab-Mir-506-P1c8  Pab-Mir-506-P1c9  Pab-Mir-506-P1c10  Pab-Mir-506-P1c11  Pab-Mir-506-P1c12  Pab-Mir-506-P1c13  Pab-Mir-506-P1d  Pab-Mir-506-P1e  Rno-Mir-506-P1 
Node of Origin (locus) Eutheria
Node of Origin (family) Eutheria
Genome context
(canFam3_add)		 chrX: 115688019-115688076 [-] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-506-P1)		 Mir-506-P4b chrX: 115652425-115652482 [-] UCSC Ensembl
Mir-506-P2b chrX: 115652721-115652779 [-] UCSC Ensembl
Mir-506-P3b chrX: 115658398-115658456 [-] UCSC Ensembl
Mir-506-P3a chrX: 115658609-115658666 [-] UCSC Ensembl
Mir-506-P2a chrX: 115665393-115665450 [-] UCSC Ensembl
Mir-506-P1 chrX: 115688019-115688076 [-] UCSC Ensembl
Seed ACUCCAG
Precursor
(pre-Mir +30nt flank)		 
GUCAACCUGGACAUUCUUUAUGUAGUACCCUACUCCAGAGAGUGGCAAUCAUUUGUAAUUAUAUGUGAUUGACACCUCUGUGAGUGGAGUAAUGCAUGACAUGUACGACACAGAUGAU
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Structure
        10          20        30         40        50        
GUCAACCUGGACAUUCU--       G   C      -|    A   G       UUGUA 
                   UUAUGUA UAC CUACUC CAGAG GUG CAAUCAU     A
                   AGUACGU AUG GGUGAG GUCUC CAC GUUAGUG     U
UAGUAGACACAGCAUGUAC       A   A      U^    -   A       UAUAU 
      110       100        90        80         70        60
Deep sequencing
Go to detailed chart
3' NTU No
MotifsCNNC at 3p(+17), UGUG in loop
Tissue expression
- +
An An An Bl Ce Co He Hi Hi Hy Ki Ki Li Lu Ov Sk Te Te
Mature sequence

Cfa-Mir-506-P1_5p
mirBase accessionNone
Sequence 
0- UACUCCAGAGAGUGGCAAUCAUU -23
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Star sequence

Cfa-Mir-506-P1_3p*
mirBase accessionMIMAT0009877
Sequence 
35- UGAUUGACACCUCUGUGAGUGGA -58
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Proposed targets TargetScanVert: cfa-miR-514
miRDB: MIMAT0009877