MirGeneDB 3.0
MirGeneDB ID

Pab-Mir-506-P1c9

Family name MIR-506 (all species)
Species Sumatran orangutan (Pongo abelii)
MiRBase ID
Paralogues Pab-Mir-506-P1a  Pab-Mir-506-P1b  Pab-Mir-506-P1c7  Pab-Mir-506-P1c8  Pab-Mir-506-P1c10  Pab-Mir-506-P1c11  Pab-Mir-506-P1c12  Pab-Mir-506-P1c13  Pab-Mir-506-P1d  Pab-Mir-506-P1e  Pab-Mir-506-P2b  Pab-Mir-506-P3  Pab-Mir-506-P4  Pab-Mir-506-P5o5  Pab-Mir-506-P5o6  Pab-Mir-506-P5o7  Pab-Mir-506-P5o8  Pab-Mir-506-P6a  Pab-Mir-506-P6b  Pab-Mir-506-P6c  Pab-Mir-506-P6d  Pab-Mir-506-P6e 
Orthologues Cfa-Mir-506-P1  Cja-Mir-506-P1c  Laf-Mir-506  Rno-Mir-506-P1 
Node of Origin (locus) P. abelii
Node of Origin (family) Eutheria
Genome context
(GCA_028885655.2_NHGRI_mPonAbe1-v2.0_traces)		 CM054702.2: 153533312-153533369 [-] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-506-P1c9)		 Mir-506-P5o5 CM054702.2: 153491537-153491594 [-] UCSC Ensembl
Mir-506-P4 CM054702.2: 153496308-153496364 [-] UCSC Ensembl
Mir-506-P2b CM054702.2: 153496557-153496614 [-] UCSC Ensembl
Mir-506-P3 CM054702.2: 153502614-153502671 [-] UCSC Ensembl
Mir-506-P1e CM054702.2: 153515734-153515791 [-] UCSC Ensembl
Mir-506-P1d CM054702.2: 153527142-153527202 [-] UCSC Ensembl
Mir-506-P1c10 CM054702.2: 153532425-153532482 [-] UCSC Ensembl
Mir-506-P1c9 CM054702.2: 153533312-153533369 [-] UCSC Ensembl
Mir-506-P1c11 CM054702.2: 153536859-153536916 [-] UCSC Ensembl
Mir-506-P1c7 CM054702.2: 153537745-153537802 [-] UCSC Ensembl
Mir-506-P1b CM054702.2: 153552186-153552245 [-] UCSC Ensembl
Mir-506-P1a CM054702.2: 153559159-153559216 [-] UCSC Ensembl
Seed GAUUGGU
Precursor
(pre-Mir +30nt flank)		 
CCAUCCUCAGACAUGCUGUGUGUGGUACCCUACUGCAGACAGUGGCAAUCAUGUAUAAUUAAAAAUGAUUGGUACGUCUGCGGGUAGAGUACUGCAUGACACAUGCAACAUACAUGAU
Get precursor sequence
Structure
        10          20        30         40        50        
CCAUCCUCAGACAUGCU-  -   UG    C   -|       A   G       GUAUA 
                  GU GUG  GUAC CUA CUGCAGAC GUG CAAUCAU     A
                  CA UAC  CAUG GAU GGCGUCUG CAU GUUAGUA     U
UAGUACAUACAACGUACA  G   GU    A   G^       -   G       AAAAU 
      110       100        90        80         70        60
Deep sequencing
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3' NTU Unknown
MotifsUG at 5p(-14), CNNC at 3p(+17)
Tissue expression
- +
Br Br Li Li
Star sequence

Pab-Mir-506-P1c9_5p*
mirBase accessionNone
Sequence 
0- UACUGCAGACAGUGGCAAUCAUG -23
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Mature sequence

Pab-Mir-506-P1c9_3p
mirBase accessionNone
Sequence 
35- UGAUUGGUACGUCUGCGGGUAGA -58
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