MirGeneDB 3.0
MirGeneDB ID

Pab-Mir-506-P1c11

Family name MIR-506 (all species)
Species Sumatran orangutan (Pongo abelii)
MiRBase ID
Paralogues Pab-Mir-506-P1a  Pab-Mir-506-P1b  Pab-Mir-506-P1c7  Pab-Mir-506-P1c8  Pab-Mir-506-P1c9  Pab-Mir-506-P1c10  Pab-Mir-506-P1c12  Pab-Mir-506-P1c13  Pab-Mir-506-P1d  Pab-Mir-506-P1e  Pab-Mir-506-P2b  Pab-Mir-506-P3  Pab-Mir-506-P4  Pab-Mir-506-P5o5  Pab-Mir-506-P5o6  Pab-Mir-506-P5o7  Pab-Mir-506-P5o8  Pab-Mir-506-P6a  Pab-Mir-506-P6b  Pab-Mir-506-P6c  Pab-Mir-506-P6d  Pab-Mir-506-P6e 
Orthologues Cfa-Mir-506-P1  Cja-Mir-506-P1c  Laf-Mir-506  Rno-Mir-506-P1 
Node of Origin (locus) P. abelii
Node of Origin (family) Eutheria
Genome context
(GCA_028885655.2_NHGRI_mPonAbe1-v2.0_traces)		 CM054702.2: 153536859-153536916 [-] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-506-P1c11)		 Mir-506-P5o5 CM054702.2: 153491537-153491594 [-] UCSC Ensembl
Mir-506-P4 CM054702.2: 153496308-153496364 [-] UCSC Ensembl
Mir-506-P2b CM054702.2: 153496557-153496614 [-] UCSC Ensembl
Mir-506-P3 CM054702.2: 153502614-153502671 [-] UCSC Ensembl
Mir-506-P1e CM054702.2: 153515734-153515791 [-] UCSC Ensembl
Mir-506-P1d CM054702.2: 153527142-153527202 [-] UCSC Ensembl
Mir-506-P1c10 CM054702.2: 153532425-153532482 [-] UCSC Ensembl
Mir-506-P1c9 CM054702.2: 153533312-153533369 [-] UCSC Ensembl
Mir-506-P1c11 CM054702.2: 153536859-153536916 [-] UCSC Ensembl
Mir-506-P1c7 CM054702.2: 153537745-153537802 [-] UCSC Ensembl
Mir-506-P1b CM054702.2: 153552186-153552245 [-] UCSC Ensembl
Mir-506-P1a CM054702.2: 153559159-153559216 [-] UCSC Ensembl
Seed GAUUGGU
Precursor
(pre-Mir +30nt flank)		 
CCAUCCUCAGACAUGCUGUGUGUGGUACCCUACUGCAGGCAGUGGCAAUCAUGUAUGAUUAAAAAUGAUUGGUACGUCUGCGGGUAGAGCACUGCAUGACACAUGCAACAUACAUGAU
Get precursor sequence
Structure
        10               20        30        40        50        
CCAUCCUCAGACAUGCU------  -|   GG     UACU      A   G       GUAUG 
                       GU GUGU  UACCC    GCAGGC GUG CAAUCAU     A
                       CG CACG  AUGGG    CGUCUG CAU GUUAGUA     U
UAGUACAUACAACGUACACAGUA  U^   AG     ----      -   G       AAAAU 
      110       100        90            80         70        60
Deep sequencing
Go to detailed chart
3' NTU Unknown
MotifsUG at 5p(-14), CNNC at 3p(+17)
Tissue expression
- +
Br Br Li Li
Star sequence

Pab-Mir-506-P1c11_5p* (predicted)
mirBase accessionNone
Sequence 
0- UACUGCAGGCAGUGGCAAUCAUG -23
Get sequence
Mature sequence

Pab-Mir-506-P1c11_3p
mirBase accessionNone
Sequence 
35- UGAUUGGUACGUCUGCGGGUAGA -58
Get sequence