Mir-506-P6d

MirGeneDB ID

Pab-Mir-506-P6d

Family name

Species

MiRBase ID

Paralogues

Pab-Mir-506-P1a Pab-Mir-506-P1b Pab-Mir-506-P1c7 Pab-Mir-506-P1c8 Pab-Mir-506-P1c9 Pab-Mir-506-P1c10 Pab-Mir-506-P1c11 Pab-Mir-506-P1c12 Pab-Mir-506-P1c13 Pab-Mir-506-P1d Pab-Mir-506-P1e Pab-Mir-506-P2b Pab-Mir-506-P3 Pab-Mir-506-P4 Pab-Mir-506-P5o5 Pab-Mir-506-P5o6 Pab-Mir-506-P5o7 Pab-Mir-506-P5o8 Pab-Mir-506-P6a Pab-Mir-506-P6b Pab-Mir-506-P6c Pab-Mir-506-P6e

Orthologues

Cja-Mir-506-P6d Hsa-Mir-506-P6d Laf-Mir-506 Mml-Mir-506-P6d

Node of Origin (locus)

Simiiformes

Node of Origin (family)

Eutheria

Genome context
(GCA_028885655.2_NHGRI_mPonAbe1-v2.0_traces)

CM054702.2: 152289353-152289409 [-] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-506-P6d)

Mir-506-P6e CM054702.2: 152287825-152287881 [-] UCSC Ensembl
Mir-506-P6d CM054702.2: 152289353-152289409 [-] UCSC Ensembl
Mir-506-P6c CM054702.2: 152289868-152289924 [-] UCSC Ensembl
Mir-506-P6b CM054702.2: 152291434-152291490 [-] UCSC Ensembl
Mir-506-P6a CM054702.2: 152291964-152292020 [-] UCSC Ensembl

Seed

ACUUGGA

Precursor
(pre-Mir +30nt flank)

CUACAAUCAGACAUGCUGUGGGAAGUGCCCUACUUGGAAAGGCAUCAGUUGCUUAAAUUACAUGUAACUAUUCCCUUUCUGAGUAGAGUAAAGCUUACCAAGUACAGGUUCAUGGUG

Get precursor sequence

Structure

        10          20        30        40        50        
CUACAAUCAGACAUGCU--|    AAG   C     UG      CAUC      UUAAA 
                   GUGGG   UGC CUACU  GAAAGG    AGUUGC     \
                   CAUUC   AUG GAUGA  CUUUCC    UCAAUG     U
GUGGUACUUGGACAUGAAC^    GAA   A     GU      CUUA      UACAU 
     110       100        90        80        70        60

Deep sequencing

3' NTU

Unknown

Motifs

UG at 5p(-14)

Tissue expression

Br	Br	Li	Li

Mature sequence

Pab-Mir-506-P6d_5p (predicted)

mirBase accession

None

Sequence

0- UACUUGGAAAGGCAUCAGUUGC -22

Get sequence

Star sequence

Pab-Mir-506-P6d_3p* (predicted)

mirBase accession

None

Sequence

35- AACUAUUCCCUUUCUGAGUAGA -57

Get sequence