Mir-506-P6c

MirGeneDB ID

Pab-Mir-506-P6c

Family name

Species

MiRBase ID

Paralogues

Pab-Mir-506-P1a Pab-Mir-506-P1b Pab-Mir-506-P1c7 Pab-Mir-506-P1c8 Pab-Mir-506-P1c9 Pab-Mir-506-P1c10 Pab-Mir-506-P1c11 Pab-Mir-506-P1c12 Pab-Mir-506-P1c13 Pab-Mir-506-P1d Pab-Mir-506-P1e Pab-Mir-506-P2b Pab-Mir-506-P3 Pab-Mir-506-P4 Pab-Mir-506-P5o5 Pab-Mir-506-P5o6 Pab-Mir-506-P5o7 Pab-Mir-506-P5o8 Pab-Mir-506-P6a Pab-Mir-506-P6b Pab-Mir-506-P6d Pab-Mir-506-P6e

Orthologues

Cja-Mir-506-P6c Hsa-Mir-506-P6c Laf-Mir-506 Mml-Mir-506-P6c

Node of Origin (locus)

Simiiformes

Node of Origin (family)

Eutheria

Genome context
(GCA_028885655.2_NHGRI_mPonAbe1-v2.0_traces)

CM054702.2: 152289868-152289924 [-] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-506-P6c)

Mir-506-P6e CM054702.2: 152287825-152287881 [-] UCSC Ensembl
Mir-506-P6d CM054702.2: 152289353-152289409 [-] UCSC Ensembl
Mir-506-P6c CM054702.2: 152289868-152289924 [-] UCSC Ensembl
Mir-506-P6b CM054702.2: 152291434-152291490 [-] UCSC Ensembl
Mir-506-P6a CM054702.2: 152291964-152292020 [-] UCSC Ensembl

Seed

ACUCAAA

Precursor
(pre-Mir +30nt flank)

CCACAAUUAGCCAUGUUGUGGGCAGUGCUCUACUCAAAAAGCUGUGAGUCACUUAGAUUACAUGUGACUGACACCUCUUUGGGUGAAGGAAGGCUCACCAAGUACACUUUCGUGGUG

Get precursor sequence

Structure

        10          20        30        40        50        
CCACAAUUAGCCAUGUU--|     AGUG  C        A  C   G      UUAGA 
                   GUGGGC    CU UACUCAAA AG UGU AGUCAC     \
                   CACUCG    GA GUGGGUUU UC ACA UCAGUG     U
GUGGUGCUUUCACAUGAAC^     GAAG  A        C  C   G      UACAU 
     110       100        90        80        70        60

Deep sequencing

3' NTU

Unknown

Motifs

UG at 5p(-14)

Tissue expression

Br	Br	Li	Li

Mature sequence

Pab-Mir-506-P6c_5p (predicted)

mirBase accession

None

Sequence

0- UACUCAAAAAGCUGUGAGUCAC -22

Get sequence

Star sequence

Pab-Mir-506-P6c_3p* (predicted)

mirBase accession

None

Sequence

35- GACUGACACCUCUUUGGGUGAA -57

Get sequence