Mir-506-P1d

MirGeneDB ID

Pab-Mir-506-P1d

Family name

Species

MiRBase ID

Paralogues

Pab-Mir-506-P1a Pab-Mir-506-P1b Pab-Mir-506-P1c7 Pab-Mir-506-P1c8 Pab-Mir-506-P1c9 Pab-Mir-506-P1c10 Pab-Mir-506-P1c11 Pab-Mir-506-P1c12 Pab-Mir-506-P1c13 Pab-Mir-506-P1e Pab-Mir-506-P2b Pab-Mir-506-P3 Pab-Mir-506-P4 Pab-Mir-506-P5o5 Pab-Mir-506-P5o6 Pab-Mir-506-P5o7 Pab-Mir-506-P5o8 Pab-Mir-506-P6a Pab-Mir-506-P6b Pab-Mir-506-P6c Pab-Mir-506-P6d Pab-Mir-506-P6e

Orthologues

Cfa-Mir-506-P1 Cja-Mir-506-P1d Hsa-Mir-506-P1d Laf-Mir-506 Mml-Mir-506-P1d Rno-Mir-506-P1

Node of Origin (locus)

Simiiformes

Node of Origin (family)

Eutheria

Genome context
(GCA_028885655.2_NHGRI_mPonAbe1-v2.0_traces)

CM054702.2: 153527142-153527202 [-] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-506-P1d)

Mir-506-P5o6 CM054702.2: 153482115-153482172 [-] UCSC Ensembl
Mir-506-P5o5 CM054702.2: 153491537-153491594 [-] UCSC Ensembl
Mir-506-P4 CM054702.2: 153496308-153496364 [-] UCSC Ensembl
Mir-506-P2b CM054702.2: 153496557-153496614 [-] UCSC Ensembl
Mir-506-P3 CM054702.2: 153502614-153502671 [-] UCSC Ensembl
Mir-506-P1e CM054702.2: 153515734-153515791 [-] UCSC Ensembl
Mir-506-P1d CM054702.2: 153527142-153527202 [-] UCSC Ensembl
Mir-506-P1c10 CM054702.2: 153532425-153532482 [-] UCSC Ensembl
Mir-506-P1c9 CM054702.2: 153533312-153533369 [-] UCSC Ensembl
Mir-506-P1c11 CM054702.2: 153536859-153536916 [-] UCSC Ensembl
Mir-506-P1c7 CM054702.2: 153537745-153537802 [-] UCSC Ensembl
Mir-506-P1b CM054702.2: 153552186-153552245 [-] UCSC Ensembl
Mir-506-P1a CM054702.2: 153559159-153559216 [-] UCSC Ensembl

Seed

GAUUGAA

Precursor
(pre-Mir +30nt flank)

CCAUCCUUAGACAUGCUGUCUGUGGUGCCUUACUCGAGAGAGUAGCAGUCACAUAUGGUAAUCACAUAUGAUUGAAACCUCUACGAGUAGUGUAACACACGACAUAUGCAGCAUACGUAAU

Get precursor sequence

Structure

        10         20         30         40        50          
CCAUCCUUAGACAUGCU-   -    G   C       -|   A  AG      CAUAUGGU 
                  GUC UGUG UGC UUACUCG AGAG GU  CAGUCA        \
                  CAG ACAC AUG GAUGAGC UCUC CA  GUUAGU        A
UAAUGCAUACGACGUAUA   C    A   U       A^   -  AA      AUACACUA 
 .       110       100        90        80         70

Deep sequencing

3' NTU

Unknown

Motifs

UG at 5p(-14), CNNC at 3p(+17)

Tissue expression

Br	Br	Li	Li

Star sequence

Pab-Mir-506-P1d_5p* (predicted)

mirBase accession

None

Sequence

0- UACUCGAGAGAGUAGCAGUCACA -23

Get sequence

Mature sequence

Pab-Mir-506-P1d_3p (predicted)

mirBase accession

None

Sequence

38- UGAUUGAAACCUCUACGAGUAGU -61

Get sequence