Mir-506-P35c-v2

MirGeneDB ID

Eca-Mir-506-P35c

Family name

MIR-506 (all species)

Species

Horse (Equus caballus)

MiRBase ID

eca-mir-8908f-1

Paralogues

Eca-Mir-506-P1m Eca-Mir-506-P1n Eca-Mir-506-P1o-v1 Eca-Mir-506-P1p-v1 Eca-Mir-506-P2a Eca-Mir-506-P2b3 Eca-Mir-506-P2b4 Eca-Mir-506-P3 Eca-Mir-506-P4a Eca-Mir-506-P4b Eca-Mir-506-P28a Eca-Mir-506-P28b Eca-Mir-506-P28c-v1 Eca-Mir-506-P28d1 Eca-Mir-506-P28d2 Eca-Mir-506-P28e1 Eca-Mir-506-P28e2 Eca-Mir-506-P28f1 Eca-Mir-506-P28f2 Eca-Mir-506-P28f3 Eca-Mir-506-P29a1 Eca-Mir-506-P29a2 Eca-Mir-506-P29b Eca-Mir-506-P30a Eca-Mir-506-P30b1-v1 Eca-Mir-506-P30b2-v1 Eca-Mir-506-P30c1 Eca-Mir-506-P30c2 Eca-Mir-506-P30d Eca-Mir-506-P31a Eca-Mir-506-P31b Eca-Mir-506-P31c Eca-Mir-506-P32 Eca-Mir-506-P33a Eca-Mir-506-P33b1 Eca-Mir-506-P33b2 Eca-Mir-506-P34 Eca-Mir-506-P35a-v1 Eca-Mir-506-P35b1-v1 Eca-Mir-506-P35b2-v1 Eca-Mir-506-P35c-v1

Orthologues

Laf-Mir-506

Node of Origin (locus)

E. caballus

Node of Origin (family)

Eutheria

Genome context
(GCA_002863925.1_EquCab3.0)

CM009179.1: 119898154-119898210 [-] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-506-P35c-v2)

Mir-506-P29b CM009179.1: 119897644-119897700 [-] UCSC Ensembl
Mir-506-P35c-v1 CM009179.1: 119898154-119898210 [-] UCSC Ensembl
Mir-506-P35c-v2 CM009179.1: 119898154-119898210 [-] UCSC Ensembl
Mir-506-P28f3 CM009179.1: 119898661-119898716 [-] UCSC Ensembl
Mir-506-P30c2 CM009179.1: 119899177-119899232 [-] UCSC Ensembl
Mir-506-P31c CM009179.1: 119900206-119900262 [-] UCSC Ensembl
Mir-506-P28e2 CM009179.1: 119901226-119901285 [-] UCSC Ensembl
Mir-506-P30b2-v2 CM009179.1: 119901738-119901793 [-] UCSC Ensembl
Mir-506-P30b2-v1 CM009179.1: 119901738-119901793 [-] UCSC Ensembl
Mir-506-P35b1-v2 CM009179.1: 119903093-119903149 [-] UCSC Ensembl
Mir-506-P35b1-v1 CM009179.1: 119903093-119903149 [-] UCSC Ensembl
Mir-506-P28f2 CM009179.1: 119904407-119904462 [-] UCSC Ensembl
Mir-506-P30d CM009179.1: 119904923-119904978 [-] UCSC Ensembl
Mir-506-P31a CM009179.1: 119905948-119906004 [-] UCSC Ensembl
Mir-506-P28e1 CM009179.1: 119906900-119906959 [-] UCSC Ensembl
Mir-506-P30b1-v1 CM009179.1: 119907412-119907467 [-] UCSC Ensembl
Mir-506-P30b1-v2 CM009179.1: 119907412-119907467 [-] UCSC Ensembl
Mir-506-P29a2 CM009179.1: 119908248-119908304 [-] UCSC Ensembl
Mir-506-P35b2-v2 CM009179.1: 119908765-119908821 [-] UCSC Ensembl
Mir-506-P35b2-v1 CM009179.1: 119908765-119908821 [-] UCSC Ensembl
Mir-506-P28d2 CM009179.1: 119909277-119909332 [-] UCSC Ensembl
Mir-506-P33b2 CM009179.1: 119910132-119910192 [-] UCSC Ensembl
Mir-506-P35a-v2 CM009179.1: 119910651-119910707 [-] UCSC Ensembl
Mir-506-P35a-v1 CM009179.1: 119910654-119910704 [-] UCSC Ensembl
Mir-506-P28d1 CM009179.1: 119911163-119911218 [-] UCSC Ensembl
Mir-506-P33b1 CM009179.1: 119912012-119912072 [-] UCSC Ensembl
Mir-506-P28f1 CM009179.1: 119913038-119913093 [-] UCSC Ensembl
Mir-506-P30c1 CM009179.1: 119913554-119913609 [-] UCSC Ensembl
Mir-506-P31b CM009179.1: 119914584-119914640 [-] UCSC Ensembl
Mir-506-P28c-v1 CM009179.1: 119915529-119915588 [-] UCSC Ensembl
Mir-506-P28c-v2 CM009179.1: 119915531-119915586 [-] UCSC Ensembl
Mir-542-v2 CM009179.1: 119915531-119915586 [-] UCSC Ensembl
Mir-506-P30a CM009179.1: 119916031-119916088 [-] UCSC Ensembl
Mir-506-P29a1 CM009179.1: 119916886-119916942 [-] UCSC Ensembl
Mir-506-P28b CM009179.1: 119917914-119917969 [-] UCSC Ensembl
Mir-506-P34 CM009179.1: 119918769-119918825 [-] UCSC Ensembl
Mir-506-P28a CM009179.1: 119919773-119919828 [-] UCSC Ensembl
Mir-506-P33a CM009179.1: 119921797-119921853 [-] UCSC Ensembl
Mir-506-P32 CM009179.1: 119922309-119922365 [-] UCSC Ensembl
Mir-9142 CM009179.1: 119927864-119927920 [-] UCSC Ensembl

Variant

Eca-Mir-506-P35c-v2

Seed

GUCACUG

Precursor
(pre-Mir +30nt flank)

ACCACUUUAGCCAUGCUGUGUGCAGUGUCCUACUCAGAAAGGUACUGAUCACUUAGAGGACAUGUAGUCACUGCCUUUCUGGGUAGAAUGAUGCCCAACAAGAACAACAUUGAUGGU

Get precursor sequence

Structure

        10          20        30        40        50        
ACCACUUUAGCCAUGCUG--| U   GU  C               C    C  UUAGA 
                    UG GCA  GU CUACUCAGAAAGGUA UGAU AC     \
                    AC CGU  UA GAUGGGUCUUUCCGU ACUG UG     G
UGGUAGUUACAACAAGAACA^ C   AG  A               C    A  UACAG 
     110       100        90        80        70        60

Deep sequencing

Go to detailed chart

3' NTU

Motifs

UG at 5p(-14), CNNC at 3p(+17)

Tissue expression

Ps	Bo	Ca	Em	En	En	En	En	En	En	En	Gl	He	He	Ho	Im	Ki	Li	Lo	Lu	Ma	Ma	Mi	Pl	Sp	Te	Tr	Ut	Ut	Yo

Star sequence

Eca-Mir-506-P35c-v2_5p*

mirBase accession

MIMAT0034701

Sequence

0- UACUCAGAAAGGUACUGAUCAC -22

Get sequence

Mature sequence

Eca-Mir-506-P35c-v2_3p

mirBase accession

None

Sequence

35- AGUCACUGCCUUUCUGGGUAGA -57

Get sequence

Variant

Eca-Mir-506-P35c-v1

Seed

AGUCACU

Precursor
(pre-Mir +30nt flank)

ACCACUUUAGCCAUGCUGUGUGCAGUGUCCUACUCAGAAAGGUACUGAUCACUUAGAGGACAUGUAGUCACUGCCUUUCUGGGUAGAAUGAUGCCCAACAAGAACAACAUUGAUGGU

Get precursor sequence

Structure

        10          20        30        40        50        
ACCACUUUAGCCAUGCUG--| U   GU  C               C    C  UUAGA 
                    UG GCA  GU CUACUCAGAAAGGUA UGAU AC     \
                    AC CGU  UA GAUGGGUCUUUCCGU ACUG UG     G
UGGUAGUUACAACAAGAACA^ C   AG  A               C    A  UACAG 
     110       100        90        80        70        60

Deep sequencing

Go to detailed chart

3' NTU

Motifs

UG at 5p(-14), CNNC at 3p(+17)

Tissue expression

Ps	Bo	Ca	Em	En	En	En	En	En	En	En	Gl	He	He	Ho	Im	Ki	Li	Lo	Lu	Ma	Ma	Mi	Pl	Sp	Te	Tr	Ut	Ut	Yo

Star sequence

Eca-Mir-506-P35c-v1_5p*

mirBase accession

MIMAT0034701

Sequence

0- UACUCAGAAAGGUACUGAUCACU -23

Get sequence

Mature sequence

Eca-Mir-506-P35c-v1_3p

mirBase accession

None

Sequence

34- UAGUCACUGCCUUUCUGGGUAGA -57

Get sequence