Mir-506-P6b

MirGeneDB ID

Hsa-Mir-506-P6b

Family name

MIR-506 (all species)

Seed

UCACAAG

Species

Human (Homo sapiens)

MiRBase ID

hsa-mir-513b

Paralogues

Hsa-Mir-506-P1 Hsa-Mir-506-P2 Hsa-Mir-506-P3 Hsa-Mir-506-P4a1 Hsa-Mir-506-P4a2 Hsa-Mir-506-P4b Hsa-Mir-506-P5 Hsa-Mir-506-P6a1 Hsa-Mir-506-P6a2 Hsa-Mir-506-P6c Hsa-Mir-506-P7a Hsa-Mir-506-P7b Hsa-Mir-506-P7c Hsa-Mir-506-P8 Hsa-Mir-506-P9 Hsa-Mir-506-P10 Hsa-Mir-506-P11 Hsa-Mir-506-P12 Hsa-Mir-506-P13 Hsa-Mir-506-P29

Orthologues

Bta-Mir-506-P6 Cpo-Mir-506-o6 Cpo-Mir-506-P6 Mml-Mir-506-P6b1 Mml-Mir-506-P6b2 Ocu-Mir-506-P6 Rno-Mir-506-P6

Node of Origin (locus)

Catarrhini

Node of Origin (family)

Eutheria

Genome context
(hg38)

chrX: 147199057-147199114 [-] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-506-P6b)

Mir-506-P6c chrX: 147189717-147189774 [-] UCSC Ensembl
Mir-506-P6b chrX: 147199057-147199114 [-] UCSC Ensembl
Mir-506-P6a2 chrX: 147213498-147213555 [-] UCSC Ensembl
Mir-506-P6a1 chrX: 147225860-147225917 [-] UCSC Ensembl
Mir-506-P1 chrX: 147230753-147230809 [-] UCSC Ensembl
Mir-506-P2 chrX: 147231002-147231059 [-] UCSC Ensembl
Mir-506-P3 chrX: 147236945-147237002 [-] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

CCACAUUCAGCCAUUCAGUGUACAGUGCCUUUCACAAGGAGGUGUCAUUUAUGUGAACUAAAAUAUAAAUGUCACCUUUUUGAGAGGAGUAAUGUACAGCAUGCACUGCAUAUGUGGU

Get precursor sequence

Structure

        10          20        30        40        50        
CCACAUUCAGCCAUUCAG--|     G   CU   A          U       GUGAA 
                    UGUACA UGC  UUC CAAGGAGGUG CAUUUAU     C
                    ACAUGU AUG  GAG GUUUUUCCAC GUAAAUA     U
UGGUGUAUACGUCACGUACG^     A   AG   A          U       UAAAA 
      110       100        90        80        70        60

Deep sequencing

Go to detailed chart

3' NTU

Motifs

CNNC at 3p(+17), UGUG in loop

Tissue expression

Ad	Ar	Bl	Bo	Bo	Bo	Bo	Bo	Br	Br	Br	Br	Br	Br	Br	Br	Br	Br	Br	Es	Ga	He	He	He	He	He	Ki	Li	Lu	Ly	Mu	Ne	Pa	Pl	Pl	Sk	Sp	Sp	St	Su	Te	Th	To	Tr	Ve

Mature sequence

Hsa-Mir-506-P6b_5p

mirBase accession

MIMAT0005788

Sequence

0- UUCACAAGGAGGUGUCAUUUAU -22

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Proposed targets

microrna.org: MIMAT0005788
TargetScanVert: hsa-miR-513b-5p
miRDB: MIMAT0005788

Star sequence

Hsa-Mir-506-P6b_3p*

mirBase accession

MIMAT0026749

Sequence

35- UAAAUGUCACCUUUUUGAGAGGA -58

Get sequence

Proposed targets

TargetScanVert: hsa-miR-513b-3p
miRDB: MIMAT0026749