Mir-506-P11

MirGeneDB ID

Rno-Mir-506-P11

Family name

MIR-506 (all species)

Species

Norway rat (Rattus norvegicus)

MiRBase ID

rno-mir-465

Paralogues

Rno-Mir-506-P1 Rno-Mir-506-P2b Rno-Mir-506-P4 Rno-Mir-506-P5 Rno-Mir-506-P13 Rno-Mir-506-P14 Rno-Mir-506-P15 Rno-Mir-506-P16 Rno-Mir-506-P17 Rno-Mir-506-P18 Rno-Mir-506-P19 Rno-Mir-506-P21 Rno-Mir-506-P22 Rno-Mir-506-P23 Rno-Mir-506-P24 Rno-Mir-506-P25

Orthologues

Laf-Mir-506 Mmu-Mir-506-P11a Mmu-Mir-506-P11b1 Mmu-Mir-506-P11b2 Mmu-Mir-506-P11c1 Mmu-Mir-506-P11c2 Mmu-Mir-506-P11d

Node of Origin (locus)

Muridae

Node of Origin (family)

Eutheria

Genome context
(rn6)

chrX: 151297377-151297433 [-] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-506-P11)

Mir-506-P24 chrX: 151252838-151252893 [-] UCSC Ensembl
Mir-506-P23 chrX: 151253328-151253384 [-] UCSC Ensembl
Mir-506-P22 chrX: 151260323-151260379 [-] UCSC Ensembl
Mir-506-P21 chrX: 151260712-151260770 [-] UCSC Ensembl
Mir-506-P19 chrX: 151272114-151272171 [-] UCSC Ensembl
Mir-506-P25 chrX: 151272836-151272891 [-] UCSC Ensembl
Mir-506-P18 chrX: 151274374-151274430 [-] UCSC Ensembl
Mir-506-P17 chrX: 151276038-151276097 [-] UCSC Ensembl
Mir-506-P16 chrX: 151281998-151282055 [-] UCSC Ensembl
Mir-506-P15 chrX: 151283471-151283527 [-] UCSC Ensembl
Mir-506-P14 chrX: 151283920-151283976 [-] UCSC Ensembl
Mir-506-P13 chrX: 151287797-151287853 [-] UCSC Ensembl
Mir-3580 chrX: 151295627-151295682 [-] UCSC Ensembl
Mir-506-P11 chrX: 151297377-151297433 [-] UCSC Ensembl

Seed

AUUUAGA

Precursor
(pre-Mir +30nt flank)

AUUUCAUCAAAGGGCUUGGAUGCAGUGCCCUAUUUAGAACGGUGCUGGUGUGAUGAAUGAAGUUUGAUCAGUGCCUUUCUGAGUAGAGUAAGGCUUACCACAUUCUACAUUUAAUAU

Get precursor sequence

Structure

        10         20         30        40        50        
AUUUCAUCAAAGGGCUU-  AU-| AG   C          C  UG     GUGAUGAA 
                  GG   GC  UGC CUAUUUAGAA GG  CUGGU        \
                  CC   CG  AUG GAUGAGUCUU CC  GACUA        U
UAUAAUUUACAUCUUACA  AUU^ GA   A          U  GU     GUUUGAAG 
     110       100        90        80        70        60

Deep sequencing

Go to detailed chart

3' NTU

Motifs

UG at 5p(-14), CNNC at 3p(+17)

Tissue expression

Dr	Dr	Ad	Bi	Bi	Bi	Bi	Br	Br	Br	Br	Ce	Ce	Ce	Ce	Co	Co	Co	Co	Du	Du	Du	Du	Fa	He	He	He	Hi	Hi	Il	Il	Je	Je	Ki	Ki	Ki	Ki	Ki	La	Li	Li	Li	Li	Li	Li	Lu	Me	Me	Mu	Ov	Pa	Pa	Pa	Sk	Sm	So	So	So	So	Sp	St	St	St	St	Te	Te	Th	Ut	Wh

Mature sequence

Rno-Mir-506-P11_5p

mirBase accession

MIMAT0012850

Sequence

0- UAUUUAGAACGGUGCUGGUGUG -22

Get sequence

Proposed targets

microrna.org: MIMAT0012850
TargetScanVert: rno-miR-465-5p
miRDB: MIMAT0012850

Co-mature sequence

Rno-Mir-506-P11_3p

mirBase accession

MIMAT0017367

Sequence

35- GAUCAGUGCCUUUCUGAGUAGA -57

Get sequence

Proposed targets

TargetScanVert: rno-miR-465-3p
miRDB: MIMAT0017367