MirGeneDB 2.1

MirGeneDB ID

Pma-Mir-33-o1

Family name MIR-33 (all species)
Seed UGCAUUG
Species Sea Lamprey (Petromyzon marinus)
MiRBase ID pma-mir-33a
Paralogues Pma-Mir-33-o2  Pma-Mir-33-o3 
Orthologues Aae-Mir-33  Aca-Mir-33-P1  Ami-Mir-33-P1  Bge-Mir-33  Bta-Mir-33-P1  Cfa-Mir-33-P1  Cgi-Mir-33  Cin-Mir-33  Cli-Mir-33-P1  Cmi-Mir-33-P1  Cpi-Mir-33-P1  Cpo-Mir-33-P1  Csc-Mir-33  Cte-Mir-33  Dan-Mir-33  Dma-Mir-33  Dme-Mir-33  Dmo-Mir-33  Dno-Mir-33-P1  Dpu-Mir-33  Dre-Mir-33-P1a  Dsi-Mir-33  Dya-Mir-33  Ebu-Mir-33  Efe-Mir-33  Esc-Mir-33  Ete-Mir-33-P1  Gga-Mir-33-P1  Gja-Mir-33-P1  Gmo-Mir-33-P1a  Gmo-Mir-33-P1b  Hsa-Mir-33-P1  Isc-Mir-33  Lch-Mir-33-P1  Lgi-Mir-33  Loc-Mir-33-P1  Mal-Mir-33-P1a  Mal-Mir-33-P1b  Mml-Mir-33-P1  Mun-Mir-33-P1  Npo-Mir-33  Oan-Mir-33-P1  Obi-Mir-33  Ocu-Mir-33-P1  Ovu-Mir-33  Pbv-Mir-33-P1  Pfl-Mir-33  Pmi-Mir-33  Sko-Mir-33  Spt-Mir-33-P1  Spu-Mir-33  Sto-Mir-33-P1  Tca-Mir-33  Tgu-Mir-33-P1  Tni-Mir-33-P1a  Tni-Mir-33-P1b  Xbo-Mir-33  Xla-Mir-33-P1c  Xla-Mir-33-P1d  Xtr-Mir-33-P1 
Node of Origin (locus) P. marinus
Node of Origin (family) Bilateria
Genome context
(GCF_010993605.1_kPetMar1.pri_genomic)
NC_046094.1: 312250-312305 [-] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
GGAUUAUUUAAGAGCUCAACUGUGGCUGUGGUGCAUUGUAGUUGCAUUGUAUGGGAAGGGAUGUACAAUGCAUCUGCAGUGCAGCACAGAUACAGUGAAAAGGCCUGCUGUCUGAC
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Structure
        10          20        30        40        50       
GGAUUAUUUAAGAGCUCA--|     G     G          U          GGGA 
                    ACUGUG CUGUG UGCAUUGUAG UGCAUUGUAU    A
                    UGACAU GACAC ACGUGACGUC ACGUAACAUG    G
CAGUCUGUCGUCCGGAAAAG^     A     G          U          UAGG 
    110       100        90        80        70        60
Deep sequencing
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3' NTU Unknown
MotifsNo
Tissue expression
 +
Br Gi Gu He Ki La Li Mo Mu Sk
Mature sequence

Pma-Mir-33-o1_5p

mirBase accessionMIMAT0019433
Sequence
0- GUGCAUUGUAGUUGCAUUGUAU -22
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Star sequence

Pma-Mir-33-o1_3p* (predicted)

mirBase accessionNone
Sequence
34- ACAAUGCAUCUGCAGUGCAGCA -56
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