Mir-33-o1

MirGeneDB ID

Pma-Mir-33-o1

Family name

MIR-33 (all species)

Species

Sea Lamprey (Petromyzon marinus)

MiRBase ID

pma-mir-33a

Paralogues

Pma-Mir-33-o2 Pma-Mir-33-o3

Orthologues

Aae-Mir-33 Aca-Mir-33-P1 Aga-Mir-33 Ami-Mir-33-P1 Ava-Mir-33 Bge-Mir-33 Bta-Mir-33-P1 Cfa-Mir-33-P1 Cin-Mir-33 Cja-Mir-33-P1 Cli-Mir-33-P1 Cmi-Mir-33-P1 Cpi-Mir-33-P1 Cpo-Mir-33-P1 Csc-Mir-33 Cte-Mir-33 Dan-Mir-33 Dgr-Mir-33 Dlo-Mir-33 Dma-Mir-33 Dme-Mir-33 Dmo-Mir-33 Dno-Mir-33-P1 Dpu-Mir-33 Dre-Mir-33-P1a Dsi-Mir-33 Dya-Mir-33 Eba-Mir-33 Ebu-Mir-33 Eca-Mir-33-P1 Efe-Mir-33 Egr-Mir-33 Esc-Mir-33 Ete-Mir-33-P1 Gga-Mir-33-P1 Gja-Mir-33-P1 Gmo-Mir-33-P1a Gmo-Mir-33-P1b Gpa-Mir-33 Gsp-Mir-33 Hru-Mir-33 Hsa-Mir-33-P1 Isc-Mir-33 Laf-Mir-33-P1 Lch-Mir-33-P1 Lgi-Mir-33 Llo-Mir-33 Loc-Mir-33-P1 Mal-Mir-33-P1a Mal-Mir-33-P1b Mgi-Mir-33 Mml-Mir-33-P1 Mmr-Mir-33-P1 Mom-Mir-33 Mun-Mir-33-P1 Npo-Mir-33 Oan-Mir-33-P1 Obi-Mir-33 Ocu-Mir-33-P1 Ofu-Mir-33 Ovu-Mir-33 Pab-Mir-33-P1 Pau-Mir-33 Pbv-Mir-33-P1 Pca-Mir-33 Pcr-Mir-33 Pdu-Mir-33 Pfl-Mir-33 Pmi-Mir-33 Sko-Mir-33 Snu-Mir-33 Spt-Mir-33-P1 Spu-Mir-33 Sto-Mir-33-P1 Tca-Mir-33 Tgu-Mir-33-P1 Tni-Mir-33-P1a Tni-Mir-33-P1b War-Mir-33 Xbo-Mir-33 Xla-Mir-33-P1c Xla-Mir-33-P1d Xtr-Mir-33-P1

Node of Origin (locus)

P. marinus

Node of Origin (family)

Bilateria

Genome context
(GCF_010993605.1_kPetMar1.pri_genomic)

NC_046094.1: 312250-312305 [-] UCSC Ensembl

Seed

UGCAUUG

Precursor
(pre-Mir +30nt flank)

GGAUUAUUUAAGAGCUCAACUGUGGCUGUGGUGCAUUGUAGUUGCAUUGUAUGGGAAGGGAUGUACAAUGCAUCUGCAGUGCAGCACAGAUACAGUGAAAAGGCCUGCUGUCUGAC

Get precursor sequence

Structure

        10          20        30        40        50       
GGAUUAUUUAAGAGCUCA--|     G     G          U          GGGA 
                    ACUGUG CUGUG UGCAUUGUAG UGCAUUGUAU    A
                    UGACAU GACAC ACGUGACGUC ACGUAACAUG    G
CAGUCUGUCGUCCGGAAAAG^     A     G          U          UAGG 
    110       100        90        80        70        60

Deep sequencing

Go to detailed chart

3' NTU

Unknown

Motifs

Tissue expression

Br	Gi	Gu	He	Ki	La	Li	Mo	Mu	Sk

Mature sequence

Pma-Mir-33-o1_5p

mirBase accession

MIMAT0019433

Sequence

0- GUGCAUUGUAGUUGCAUUGUAU -22

Get sequence

Star sequence

Pma-Mir-33-o1_3p* (predicted)

mirBase accession

None

Sequence

34- ACAAUGCAUCUGCAGUGCAGCA -56

Get sequence